Table 1.
General statistics of the 19 draft metagenome-assembled genomes (MAGs) reconstructed from bean and radish metagenomes.
| MAG | Completeness | Contamination | Strain heterogeneity | # Contigs | Size (Mb) | Coverage | Phylogenetic affiliation | ||
|---|---|---|---|---|---|---|---|---|---|
| S | G | P | |||||||
| MAGb21 | 100 | 0 | 0 | 43 | 3.96 | 15.62 | 0.01 | 0.01 | Acinetobacter sp like |
| MAGb07 | 97.32 | 0.08 | 0 | 52 | 5.94 | 161.36 | 8.90 | 20.63 | Pseudomonas moraviensis |
| MAGr09 | 86.84 | 23.74 | 95.38 | 90 | 3.33 | 23.26 | 0.31 | 0.99 | Enterobacteriales |
| MAGb17 | 99.29 | 1.32 | 14.29 | 87 | 4.65 | 31.85 | 1.23 | 12.65 | Rosenbergiella nectarea |
| MAGb15 | 98.79 | 0.51 | 16.67 | 56 | 4.96 | 1.62 | 35.43 | 19.82 | Pseudomonas fulva |
| MAGb14 | 94.3 | 0.98 | 80 | 110 | 4.58 | 1.64 | 32.44 | 21.81 | Pseudomonas fulva |
| MAGb12 | 92.47 | 2.27 | 22.73 | 497 | 5.46 | 3.11 | 13.70 | 3.68 | Pseudomonas sp. like |
| MAGb24 | 93.44 | 0.79 | 14.29 | 36 | 3.12 | 0.79 | 24.51 | 5.50 | Rosenbergiella nectarea |
| MAGb18 | 90.07 | 29.4 | 95.56 | 843 | 3.91 | 0.31 | 19.75 | 2.01 | Bacillus sp. like |
| MAGb13 | 98.03 | 1.41 | 12.5 | 120 | 5.21 | 0.52 | 35.15 | 5.20 | Enterobacteriales |
| MAGb04 | 93.22 | 0.17 | 33.33 | 33 | 4.3 | 4.74 | 57.79 | 87.51 | Pseudomonas sp. RIT-Pia |
| MAGb09 | 98.57 | 15.19 | 87.9 | 278 | 5.83 | 0.67 | 0.87 | 110.52 | Pseudomonas psychrotolerans sp. like |
| MAGb05 | 72.28 | 14.04 | 100 | 110 | 4.7 | 3.47 | 1.04 | 25.59 | Pseudomonas graminis sp. like |
| MAGb03 | 98.03 | 0.08 | 0 | 47 | 4.03 | 138.30 | 153.24 | 1683.91 | Pantoea agglomerans |
| MAGr08 | 86.14 | 23.67 | 100 | 260 | 3.97 | 5.66 | 0.22 | 32.6 | Erwinia gerundiensis |
| MAGr14 | 91.7 | 4.1 | 19.57 | 377 | 4.24 | 0.6 | 0.12 | 14.71 | Pantoea sp. IMH |
| MAGb26 | 72.72 | 0.08 | 0 | 64 | 2.62 | 1.90 | 2.38 | 68.37 | Erwinia gerundiensis |
| MAGb19 | 96.58 | 0.72 | 50 | 79 | 4.2 | 0.69 | 1.45 | 32.77 | Leclercia adecarboxylata sp. like |
| MAGr12 | 97.64 | 1.32 | 16.67 | 236 | 5.18 | 0.03 | 0 | 10.85 | Flavobacterium sp. like |
Completeness, contamination and strain heterogenity is based on CheckM v 1.0.4. Contamination indicate the percentage of specific marker genes that are found in multiple copy number, and strain heterogeneity values indicate the percentage of multi-copy marker genes with more than 90% sequence identity. MAG coverage was calculated with their corresponding reads (either bean or radish). Thus, coverage (C) was computed with the formula C = LN/B, where L stands for read length in bp (150), N stands for number of reads mapping the MAG and B is the total length of the MAG in bp. S, seeds; G, Germinating seeds; P, Seedlings.