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ImmuneDB pipeline: The script used to run ImmuneDB. The germline files are included as supplemental files.
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immunedb_admin create frontiers ~/configs immunedb_identify ~/configs/frontiers.json imgt_human_v.fasta \ imgt_human_j.fasta --trim-to 150 --max-padding 150 immunedb_collapse ~/configs/frontiers.json immunedb_clones ~/configs/frontiers.json similarity immunedb_clone_stats ~/configs/frontiers.json immunedb_sample_stats ~/configs/frontiers.json |
