Skip to main content
. Author manuscript; available in PMC: 2019 Jul 1.
Published in final edited form as: Gastroenterology. 2018 Apr 5;155(1):168–179. doi: 10.1053/j.gastro.2018.03.064

Table 2.

GWAS results including FUMA annotations.

SNP CHR EA OA EAF
CASES
EAF
CTRLS
INFO beta SE P Positional map* eQTL map** Chromatin Interactions map***
rs140532807 1p36.22 A G 0.015 0.011 0.89 0.289 0.062 3.22×10−6 PIK3CD
rs10923043 1p22.2 T C 0.565 0.548 0.99 0.069 0.015 3.70×10−6 KYAT3 COL24A1, ODF2L, CLCA2, CLCA1, CLCA4, SH3GLB1, SEP15, HS2ST1, LMO4, PKN2, BARHL2
rs116449111 2p22.3 C G 0.974 0.979 0.97 −0.218 0.046 2.36×10−6 FAM98A CAPN13, GALNT14, TTC27, LTBP1, RASGRP3, CRIM1, FEZ2, FAM98A
rs116781238 2p16.1 A G 0.056 0.048 0.95 0.161 0.032 5.61×10−7 VRK2, PAPOLG, PUS10, PEX13, AHSA2
rs1105615 4p16.1 T C 0.173 0.160 0.99 0.091 0.02 2.88×10−6 ABLIM2 SORCS2
rs13212302 6q16.3 T C 0.573 0.590 0.99 −0.071 0.015 2.18×10−6 ASCC3, GRIK2
rs117107090 8p21.3 A G 0.975 0.980 0.95 −0.225 0.048 2.55×10−6 LZTS1, DOK2, XPO7
rs4871509 8q24.13 A G 0.463 0.446 0.99 0.071 0.015 1.69×10−6 MTSS1 TRMT12, NDUFB9, MTSS1 TATDN1, ZNF572, SQLE, KIAA0196, NSMCE2, MTSS1, TRMT12, NDUFB9
rs10512344 9q31.2 C G 0.048 0.040 0.98 0.190 0.034 3.57×10−8 OR13C8, TAL2, TMEM38B, ZNF462, RAD23B, ELP1, FAM206A, TMEM245
rs925870 11p14.1 T C 0.860 0.848 0.99 0.100 0.021 2.41×10−6 ANO3, MUC15, BBOX1, CCDC34, LGR4, LIN7C, BDNF, KIF18A, METTL15, KCNA4, FSHB, ARL14EP
rs61939612 12q12 T G 0.390 0.373 0.97 0.072 0.015 2.74×10−6 CPNE8 CPNE8 ALG10B, KIF21A, ABCD2, C12orf40, SLC2A13, MUC19, PDZRN4, CPNE8
rs1540951 13q•14.11 A G 0.318 0.334 0.98 −0.075 0.016 3.14×10−6 EPSTI1 DNAJC15, EPSTI1 AKAP11, FAM216B, ENOX1, CCDC122, LACC1, EPSTI1, DNAJC15
rs147085754 13q33.3 A C 0.030 0.025 0.99 0.198 0.043 4.57×10−6 LIG4, FAM155A DAOA, ARGLU1, ABHD13, LIG4, FAM155A
rs146313367 17p13.2 A C 0.084 0.075 0.97 0.125 0.027 3.04×10−6 WSCD1 NLRP1, AIPL1, FAM64A, PITPNM3, KIAA0753, TXNDC17, MED31, C17orf100, XAF1, FBXO39, TEKT1

CHR: chromosome and cytogenetic band; BP: genomic coordinates according to Hg19 build; EA: effect allele; OA: other allele; EAF CASES: effect allele frequency in cases; EAF CTRLS: effect allele frequency in controls; INFO: imputation quality score; beta: regression coefficient; SE: standard error.

*

genes physically mapped within the region;

**

genes mapped through eQTL effects;

***

genes mapped through chromatin interactions.