Table 2.
GWAS results including FUMA annotations.
SNP | CHR | EA | OA | EAF CASES |
EAF CTRLS |
INFO | beta | SE | P | Positional map* | eQTL map** | Chromatin Interactions map*** |
---|---|---|---|---|---|---|---|---|---|---|---|---|
rs140532807 | 1p36.22 | A | G | 0.015 | 0.011 | 0.89 | 0.289 | 0.062 | 3.22×10−6 | PIK3CD | ||
rs10923043 | 1p22.2 | T | C | 0.565 | 0.548 | 0.99 | 0.069 | 0.015 | 3.70×10−6 | KYAT3 | COL24A1, ODF2L, CLCA2, CLCA1, CLCA4, SH3GLB1, SEP15, HS2ST1, LMO4, PKN2, BARHL2 | |
rs116449111 | 2p22.3 | C | G | 0.974 | 0.979 | 0.97 | −0.218 | 0.046 | 2.36×10−6 | FAM98A | CAPN13, GALNT14, TTC27, LTBP1, RASGRP3, CRIM1, FEZ2, FAM98A | |
rs116781238 | 2p16.1 | A | G | 0.056 | 0.048 | 0.95 | 0.161 | 0.032 | 5.61×10−7 | VRK2, PAPOLG, PUS10, PEX13, AHSA2 | ||
rs1105615 | 4p16.1 | T | C | 0.173 | 0.160 | 0.99 | 0.091 | 0.02 | 2.88×10−6 | ABLIM2 | SORCS2 | |
rs13212302 | 6q16.3 | T | C | 0.573 | 0.590 | 0.99 | −0.071 | 0.015 | 2.18×10−6 | ASCC3, GRIK2 | ||
rs117107090 | 8p21.3 | A | G | 0.975 | 0.980 | 0.95 | −0.225 | 0.048 | 2.55×10−6 | LZTS1, DOK2, XPO7 | ||
rs4871509 | 8q24.13 | A | G | 0.463 | 0.446 | 0.99 | 0.071 | 0.015 | 1.69×10−6 | MTSS1 | TRMT12, NDUFB9, MTSS1 | TATDN1, ZNF572, SQLE, KIAA0196, NSMCE2, MTSS1, TRMT12, NDUFB9 |
rs10512344 | 9q31.2 | C | G | 0.048 | 0.040 | 0.98 | 0.190 | 0.034 | 3.57×10−8 | OR13C8, TAL2, TMEM38B, ZNF462, RAD23B, ELP1, FAM206A, TMEM245 | ||
rs925870 | 11p14.1 | T | C | 0.860 | 0.848 | 0.99 | 0.100 | 0.021 | 2.41×10−6 | ANO3, MUC15, BBOX1, CCDC34, LGR4, LIN7C, BDNF, KIF18A, METTL15, KCNA4, FSHB, ARL14EP | ||
rs61939612 | 12q12 | T | G | 0.390 | 0.373 | 0.97 | 0.072 | 0.015 | 2.74×10−6 | CPNE8 | CPNE8 | ALG10B, KIF21A, ABCD2, C12orf40, SLC2A13, MUC19, PDZRN4, CPNE8 |
rs1540951 | 13q•14.11 | A | G | 0.318 | 0.334 | 0.98 | −0.075 | 0.016 | 3.14×10−6 | EPSTI1 | DNAJC15, EPSTI1 | AKAP11, FAM216B, ENOX1, CCDC122, LACC1, EPSTI1, DNAJC15 |
rs147085754 | 13q33.3 | A | C | 0.030 | 0.025 | 0.99 | 0.198 | 0.043 | 4.57×10−6 | LIG4, FAM155A | DAOA, ARGLU1, ABHD13, LIG4, FAM155A | |
rs146313367 | 17p13.2 | A | C | 0.084 | 0.075 | 0.97 | 0.125 | 0.027 | 3.04×10−6 | WSCD1 | NLRP1, AIPL1, FAM64A, PITPNM3, KIAA0753, TXNDC17, MED31, C17orf100, XAF1, FBXO39, TEKT1 |
CHR: chromosome and cytogenetic band; BP: genomic coordinates according to Hg19 build; EA: effect allele; OA: other allele; EAF CASES: effect allele frequency in cases; EAF CTRLS: effect allele frequency in controls; INFO: imputation quality score; beta: regression coefficient; SE: standard error.
genes physically mapped within the region;
genes mapped through eQTL effects;
genes mapped through chromatin interactions.