Table 3.
Estimated effects of the significant haplotypes and their corresponding homozygotes within six identified QTLs.
| Name | Haplotype1 | Trait | EffectH ± SD2 | P-value3 | EffectD ± SD4 | P-value3 |
|---|---|---|---|---|---|---|
| BW_H2 | CGAG | BW4 | 16.3 ± 3.9 | 3.9E-5∗ | 41.8 ± 11.3 | 2.4E-4∗ |
| BW5 | 20.4 ± 5.4 | 1.9E-4∗ | 51.2 ± 15.7 | 1.2E-3∗ | ||
| BW6 | 31.1 ± 7.2 | 2.2E-5∗ | 91.8 ± 20.7 | 1.2E-5∗ | ||
| BW7 | 36.3 ± 9.6 | 1.9E-4∗ | 104.4 ± 27.1 | 1.4E-4∗ | ||
| BW8 | 47.1 ± 11.2 | 3.3E-5∗ | 137.8 ± 32.1 | 2.3E-5∗ | ||
| BW9 | 46.2 ± 13.3 | 5.8E-4 | 133.4 ± 38.6 | 6.1E-4∗ | ||
| BW10 | 62.2 ± 15.4 | 6.6E-5∗ | 182 ± 44.6 | 5.5E-5∗ | ||
| BW11 | 61.1 ± 16.9 | 3.4E-4 | 176.1 ± 48.7 | 3.4E-4∗ | ||
| BW12 | 71.4 ± 19.4 | 2.7E-4∗ | 170.2 ± 56.5 | 2.8E-3 | ||
| BW13 | 72.6 ± 20.7 | 4.9E-4 | 172.2 ± 60.4 | 4.6E-3 | ||
| BW_H3 | AGG | BW3 | / | / | -15 ± 5.1 | 3.3E-3 |
| BW5 | / | / | -28.6 ± 10.6 | 7.4E-3 | ||
| BW8 | / | / | -72.8 ± 22.2 | 1.1E-3∗ | ||
| BW9 | / | / | -92.8 ± 26.2 | 4.5E-4∗ | ||
| BW10 | -38.7 ± 12.1 | 1.5E-3 | -107.8 ± 30.7 | 5E-4∗ | ||
| BW11 | / | / | -112.1 ± 33.5 | 9E-4∗ | ||
| BW12 | / | / | -127.7 ± 38.3 | 9.3E-4∗ | ||
| BW13 | / | / | -136.6 ± 40.7 | 8.7E-4∗ | ||
| BW14 | / | / | -137.5 ± 43.9 | 1.8E-3 | ||
| BW15 | / | / | -152.3 ± 46.8 | 1.2E-3∗ | ||
| BW_H5 | GAC | BW6 | / | / | -58 ± 19.6 | 3.3E-3 |
| BW7 | / | / | -69.2 ± 26 | 8.2E-3 | ||
| BW8 | / | / | -91.1 ± 30.1 | 2.6E-3 | ||
| BW9 | / | / | -105 ± 35.5 | 3.3E-3 | ||
| BW10 | / | / | -133.8 ± 41.5 | 1.3E-3∗ | ||
| BW11 | / | / | -158 ± 45.2 | 5.2E-4∗ | ||
| BW12 | -70.1 ± 18.8 | 2.1E-4∗ | -186.2 ± 51.9 | 3.7E-4∗ | ||
| BW13 | -65.3 ± 20.1 | 1.2E-3 | -189.4 ± 55.3 | 6.7E-4∗ | ||
| BW14 | / | / | -213.2 ± 59 | 3.48E-4∗ | ||
| BW15 | / | / | -240.1 ± 62.8 | 1.5E-4∗ | ||
| BW_H9a | AGGA | BW11 | -35.7 ± 10.2 | 5.5E-4 | 82.2 ± 27.4ab | 2.9E-3 |
| BW12 | -43.7 ± 11.8 | 2.3E-4∗ | 111.1 ± 31.3ab | 4.3E-4∗ | ||
| BW13 | -46.6 ± 12.5 | 2.3E-5∗ | 104.6 ± 33.2ab | 1.7E-3 | ||
| BW14 | -54.5 ± 13.3 | 5.3E-5∗ | 141.5 ± 35.1ab | 6.8E-5∗ | ||
| BW15 | -55.8 ± 14.3 | 1.1E-4∗ | 149.4 ± 37.7B | 9E-5∗ | ||
| BW_H9b | GAGC | BW13 | / | / | 310.5 ± 109.8 | 5E-3 |
| BW14 | 90.3 ± 27.5 | 1.1E-3 | 385.9 ± 115.9 | 1E-3∗ | ||
| BW15 | / | / | 386.1 ± 124.6 | 2.1E-3 | ||
| BW_H20 | GG | BW8 | -27.6 ± 8.6 | 1.4E-3 | / | / |
| BW11 | -68.4 ± 15.5 | 1.4E-5∗ | -94.2 ± 31.7 | 3.2E-3 | ||
| BW12 | -74.1 ± 17.8 | 3.9E-5∗ | -130 ± 36.5 | 4.2E-4∗ | ||
| BW13 | -59.1 ± 14.7 | 6.8E-5∗ | -138.7 ± 38.6 | 3.8E-4∗ | ||
| BW14 | -64.7 ± 16.7 | 1.3E-4∗ | -135.6 ± 41.6 | 1.2E-3∗ | ||
| BW15 | -49 ± 12.8 | 1.5E-4∗ | -146.5 ± 44.3 | 1E-3∗ | ||
| BW_H27 | AGG | BW4 | / | / | 21.8 ± 8 | 7E-3 |
| BW5 | / | / | 31.9 ± 11.1 | 4.2E-3 | ||
| BW6 | 17.8 ± 5.4 | 1.1.E-3 | 45 ± 14.7 | 2.4E-3 | ||
| BW7 | 28.6 ± 7.2 | 8.2E-5∗ | 72.4 ± 19.2 | 1.9E-4∗ | ||
| BW8 | 29.1 ± 8.4 | 5.9E-4 | 69.6 ± 22.5 | 2.2E-3 | ||
| BW9 | 34.1 ± 9.9 | 6.8E-4 | / | / |
1Shows significant haplotype detected within each QTL, core SNPs are marked in bold and with the underscores.
2Presents estimates of the effects of haplotypes.
3“∗” denotes 1% test-wide significance, while the remaining loci were the 5% test-wide significance.
4Presents estimates of the effects of the homozygous haplotypes. Specifically, letter ab means that the denoted estimates are of the combined effects of BW_H9a and BW_H9b.