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. 2018 Jun 28;9:875. doi: 10.3389/fpls.2018.00875

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Copyright © 2018 Song, Li, Sun, Hu, Wu, Liu, Wang, Ma and Zhao.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Genome-wide association mapping results for cold tolerance at seedling stage with the 150 accessions of landraces in the Ting’s rice core collection. (A) Manhattan plots of GWAS results with genetic association. The blue dashed line represents the Bonferroni significance threshold at P < 0.01 (with an empirical P < 1.48 × 10^-7) and the red dashed line represents the significant threshold of P < 1.48 × 10^-5. The red vertical lines mark the polymorphic sites identified by high-throughput sequencing. (B) Gene model of QTL. Filled black boxes represent eight candidate genes. (C) A representation of pairwise r² values (a measure of LD) among all polymorphic sites in QTL, where the darkness of the color of each box corresponds to the r² value according to the legend.