. 2018 Jul 2;9:1443. doi: 10.3389/fmicb.2018.01443

Table 1.

Bacteria and plasmids used in this study.

Name/species	Genotype/characteristics^a	References
*Plasmids*
pB10	Wild type IncP-1 plasmid isolated from activated sludge	Schlüter et al. (2003)
pBELX	pEX-A derivative (pUC18-based) containing qPCR target sequences for trfA of IncP-1 plasmids, the Eubacterial 16S rRNA gene	Bellanger et al. (2014b)
pNORM1	pEX-A derivative (pUC18-based) containing the qPCR target sequences for intI of class 1 integron, the Eubacterial 16S rRNA gene	Gat et al. (2017)
*Bacillus subtilis*
LMG 7135^T	ATCC 6051, Type strain	BCCM/LMG^b
CM291	Rif^R derivative of LMG 7135^T	This work
CM295	CM291(pB10), Rif^R, Amx^R, Str^R, Sul^R, Tet^R	This work
*Cupriavidus metallidurans*
AE815	plasmid free and Rif^R derivative of wild type strain CH34	Springael et al. (1993)
CM124	AE815(pB10), Rif^R, Amx^R, Str^R, Sul^R, Tet^R	Bellanger et al. (2014a)
*Delftia acidovorans*
CM122	Delftia acidovorans, Rif^R, Kan^R	Eva Top lab strain collection
CM294	CM122(pB10), Rif^R, Kan^R, Amx^R, Str^R, Sul^R, Tet^R	This work
*Escherichia coli*
DH5α	ϕ80lacZΔacZerecA1endA1gyrA96 (Nal^R) thi-1 hsdR17(r_K^-m_K⁺) supE44 relA1 deoR Δ(lacZYAargF) U169	Sambrook et al. (1989)
MG1655	Sequenced λ^- and F^-derivative of strain K-12	Blattner et al. (1997)
CM102	DH5α(pB10), Nal^R, Amx^R, Str^R, Sul^R, Tet^R	Schlüter et al. (2003)
CM125	Nal^R derivative of MG1655	Bellanger et al. (2014a)
CM278	CM125(pB10), Nal^R, Amx^R, Str^R, Sul^R, Tet^R	This work
*Pseudomonas fluorescens*
CIP 69.13^T	ATCC 13525, Type strain	ATCC^c
CM292	Rif^R derivative of wild type strain CIP 69.13^T	This work
CM297	CM292(pB10), Rif^R, Amx^R, Str^R, Sul^R, Tet^R	This work
*Pseudomonas putida*
SM1443	KT2442 (Rif^R) with a mini-Tn5-lacI^q insertion	Christensen et al. (1998)
CM236	SM1443(pB10), Rif^R, Amx^R, Str^R, Sul^R, Tet^R	This work
*Shewanella oneidensis*
CM87	Rif^R derivative of wild type strain MR-1^T	Schwalb et al. (2003)
CM293	CM87(pB10), Rif^R, Amx^R, Str^R, Sul^R, Tet^R	This work

^aAntibiotic resistance phenotype: Amx^R, amoxicillin; Kan^R, kanamycin; Nal^R, nalidixic acid; Rif^R, rifampicin; Str^R, streptomycin; Sul^R, sulfamides; Tet^R, tetracycline. ^bBelgian coordinated collections of microorganisms. ^cAmerican Type Culture Collection.