Table 2.
Exon | Sense primer | PCR product (base pairs) | T (°C) |
---|---|---|---|
RET-1 | 5′- GCACCCGCCATCCAGACC -3′ | 567 | 62 |
RET-1 | 5′- TCTCCTGCCGAAACAGAACTC -3′ | ||
RET-2 | 5′- CGGCTTGGATGATTGAGAATAGG-3′ | 583 | 58 |
RET-2 | 5′- GTGATAAGGGCGGCTTGAGG-3′ | ||
RET-3 | 5’-TCCTCCCCATTCCCGACTG − 3′ | 573 | 56 |
RET-3 | 5′- AGGCAGGCAAGATTCCAACC-3’ | ||
RET-4 | 5’-CAACCAGCACGAGTGAGGAC -3’ | 640 | 60 |
RET-4 | 5’-ACGGAGGCGAAGGACAAATG −3’ | ||
RET-5 | 5’-AACACACATCTGGTCCACCTATG − 3’ | 375 | 56 |
RET-5 | 5′- AAGAGCGAGCACCTCATTTCC-3’ | ||
RET-6 | 5’-GTGTGAAAGTGCGTGTTTGC -3’ | 428 | 60 |
RET-6 | 5’-CAGTCTACTCTGTGCTGGTTG −3’ | ||
RET-7 | 5′- GGACTTAGGCTGTGTGGGAATC-3’ | 516 | 58 |
RET-7 | 5′- -CTGGAAGGAGCAACCATTTACTG-3’ | ||
RET-8 | 5’-GCTGGTGCTGTTCCCTGTC -3’ | 375 | 62 |
RET-8 | 5’-CACTGCTGCCCGCTATGC -3’ | ||
RET-9 | 5’-CCTCCAGTTGCTCCTCCCTAG −3’ | 470 | 58 |
RET-9 | 5′- CTGCTTCTGAAATCTGTGTGTGC-3’ | ||
RET-10 | 5’-GGCAGAGTCCTTTGTTCAGATG −3’ | 452 | 58 |
RET-10 | 5′- CAGCAATTTCCTCCCTTGTTGG-3’ | ||
RET-11 | 5’-GAGCCTCTGTCTCCATCTGTAAG −3’ | 606 | 56 |
RET-11 | 5’-CTCGTCTGCCCAGCGTTG −3 | ||
RET-12 | 5’ GCAGAGACAGGCAGCGTTG--3’ | 499 | 58 |
RET-12 | 5′- CCTTCCAGGGAGAGCAAAGTC-3’ | ||
RET-13 | 5′- AGAAGCCTCAAGCAGCATCG-3’ | 432 | 58 |
RET-13 | 5’-TCAGCCCGTGGACTCAGC-3’ | ||
RET-14 | 5′- GGCAGAGAGCAAGTGGTTCAAG-3’ | 618 | 60 |
RET-14 | 5′- GGGCGTGGTGGAGTCAGG-3’ | ||
RET-15 | 5′- CCACACACCACCCCTCTG-3’ | 401 | 58 |
RET-15 | 5’-GGCTGAGCGGAGTTCTAATTG −3’ | ||
RET-16 | 5’-CACTCCTCTGGTTACTGAAAGC -3’ | 370 | 56 |
RET-16 | 5′- CATTTGCCTCACGAACACATC-3’ | ||
RET-17 | 5′- CCAGACCCAGGCTGACATC-3’ | 449 | 60 |
RET-17 | 5′- ATCTACTGCCACACCCAAGG-3’ | ||
RET-18 | 5′- AGGGTGCGATGGCTGTGG-3’ | 352 | 58 |
RET-18 | 5′- AGGGTTCAATCTGCTGTCTGC-3’ | ||
RET-19 | 5’-CTTGGAGAGGTCAGGAGATTGG −3’ | 453 | 58 |
RET-19 | 5’-AATGCCTAAATGTAAACTGGATGC -3’ | ||
RET-20 | 5′- TTGGAAACCTGGAACACAAAACC-3’ | 430 | 62 |
RET-20 | 5′- GCCACCTGGGAACTGAACAC-3’ |
PCR polymerase chain reaction, RET rearranged during transfection, T annealing temperature for the PCR reactions