Table 1.
Pathway Analysis Showing Over-representation of Gene Ontology Biological Process Terms Related to Inflammation and Cell Cycle in dnTGF-βRII-T2A-Pbbz PSMA CAR T Cells at Days 14 and 21 of Culture
Pathway ID | Pathway Description | Observed Gene Count | False Discovery Rate |
---|---|---|---|
Day 14 | |||
GO.0034097 | response to cytokine | 14 | 8.87E−08 |
GO.0051707 | response to other organism | 14 | 8.87E−08 |
GO.1903708 | positive regulation of hemopoiesis | 9 | 9.32E−08 |
GO.1902107 | positive regulation of leukocyte differentiation | 8 | 4.32E−07 |
GO.0033993 | response to lipid | 13 | 3.61E−06 |
GO.0032496 | response to lipopolysaccharide | 9 | 5.37E−06 |
GO.0002639 | positive regulation of immunoglobulin production | 5 | 5.66E−06 |
GO.0006954 | inflammatory response | 10 | 1.01E−05 |
GO.0031347 | regulation of defense response | 12 | 1.19E−05 |
GO.0009617 | response to bacterium | 10 | 1.44E−05 |
Day 21 | |||
GO.0000278 | mitotic cell cycle | 67 | 2.00E−34 |
GO.1903047 | mitotic cell cycle process | 57 | 1.46E−27 |
GO.0007049 | cell cycle | 72 | 7.91E−27 |
GO.0022402 | cell cycle process | 62 | 1.12E−24 |
GO.0007067 | mitotic nuclear division | 39 | 6.56E−24 |
GO.0051301 | cell division | 42 | 8.18E−22 |
GO.0000280 | nuclear division | 40 | 1.50E−21 |
GO.0048285 | organelle fission | 41 | 1.50E−21 |
GO.0007059 | chromosome segregation | 27 | 1.62E−18 |
GO.0051726 | regulation of cell cycle | 45 | 2.17E−13 |
The top 10 processes are listed; the complete list is shown in Table S3.