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. 2018 May 8;26(7):1855–1866. doi: 10.1016/j.ymthe.2018.05.003

Table 1.

Pathway Analysis Showing Over-representation of Gene Ontology Biological Process Terms Related to Inflammation and Cell Cycle in dnTGF-βRII-T2A-Pbbz PSMA CAR T Cells at Days 14 and 21 of Culture

Pathway ID Pathway Description Observed Gene Count False Discovery Rate
Day 14

GO.0034097 response to cytokine 14 8.87E−08
GO.0051707 response to other organism 14 8.87E−08
GO.1903708 positive regulation of hemopoiesis 9 9.32E−08
GO.1902107 positive regulation of leukocyte differentiation 8 4.32E−07
GO.0033993 response to lipid 13 3.61E−06
GO.0032496 response to lipopolysaccharide 9 5.37E−06
GO.0002639 positive regulation of immunoglobulin production 5 5.66E−06
GO.0006954 inflammatory response 10 1.01E−05
GO.0031347 regulation of defense response 12 1.19E−05
GO.0009617 response to bacterium 10 1.44E−05

Day 21

GO.0000278 mitotic cell cycle 67 2.00E−34
GO.1903047 mitotic cell cycle process 57 1.46E−27
GO.0007049 cell cycle 72 7.91E−27
GO.0022402 cell cycle process 62 1.12E−24
GO.0007067 mitotic nuclear division 39 6.56E−24
GO.0051301 cell division 42 8.18E−22
GO.0000280 nuclear division 40 1.50E−21
GO.0048285 organelle fission 41 1.50E−21
GO.0007059 chromosome segregation 27 1.62E−18
GO.0051726 regulation of cell cycle 45 2.17E−13

The top 10 processes are listed; the complete list is shown in Table S3.