Table 2. Pedigree-based (FPED), ROH-based (FROH) and microsatellite-based (FMIC) inbreeding coefficients for highly inbred (HI) and outbred (LI) bulls.
| HI | LI | P-Value | HI / LI | |||||
|---|---|---|---|---|---|---|---|---|
| FPED | 0.1644 | ± | 0.0101 | 0.0080 | ± | 0.0001 | 1.00E-06 | 20.68 |
| FPED3 | 0.0830 | ± | 0.0121 | 0 | ----- | ----- | ||
| FMIC | 0.1595 | ± | 0.0613 | 0.1155 | ± | 0.0001 | 1.46E-02 | 1.38 |
| FROH | 0.1510 | ± | 0.0091 | 0.0356 | ± | 0.0059 | 5.40E-06 | 4.24 |
| FROH[1–2] | 0.0320 | ± | 0.0027 | 0.0150 | ± | 0.0037 | 1.10E-05 | 2.14 |
| FROH[2–4] | 0.0247 | ± | 0.0018 | 0.0077 | ± | 0.0001 | 1.30E-06 | 3.20 |
| FROH[4–8] | 0.0272 | ± | 0.0025 | 0.0054 | ± | 0.0001 | 4.20E-05 | 5.07 |
| FROH[8–16] | 0.0317 | ± | 0.0039 | 0.0038 | ± | 0.0001 | 1.00E-06 | 8.26 |
| FROH[>16] | 0.0354 | ± | 0.0057 | 0.0037 | ± | 0.0001 | 6.10E-06 | 9.55 |
HI/LI: fold increase between high and low inbreeding. P-values calculated through independent T-test.