Table 2.
Known miRNAs identification from the tube foot of S. intermedius.
| Known-miRNA | Sequences (5′-3′) | Length | Mean readcount | Mean TPM |
|---|---|---|---|---|
| spu-miR-92d | UAUUGCACUUACCCCGGCUG | 20 | 122.67 | 65.22 |
| spu-miR-124 | UAAGGCACGCGGUGAAUGCCA | 21 | 10.00 | 5.28 |
| spu-miR-96 | UUUGGCACUAGCACAUUUUGC | 21 | 21.67 | 11.59 |
| spu-miR-2013 | UGCAGCAUGAUGUAGUGGUGU | 21 | 106.00 | 55.23 |
| spu-miR-92e | UAUUGCACUUACCCCGGCUUA | 21 | 161.33 | 82.26 |
| spu-miR-31 | AGGCAAGAUGUUGGCAUAGCU | 21 | 18875.67 | 9951.81 |
| spu-miR-2010 | UUACUGUUGAUGUCAGCCCCUU | 22 | 2.67 | 1.28 |
| spu-miR-252b | CUAAGUAGUAGUGCCGCAGGUA | 22 | 2.67 | 1.27 |
| spu-miR-183 | UAUGGCACUAUAGAAUUCACUG | 22 | 3.00 | 1.42 |
| spu-miR-210 | UUGUGCGUGCGACAGCGACUGA | 22 | 5.33 | 2.78 |
| spu-miR-137 | UAUUGCUUGAGAAUACACGUAG | 22 | 11.33 | 6.22 |
| spu-miR-92b-3p | UAUUGCACUUGUCCCGGCCUGC | 22 | 17.33 | 9.21 |
| spu-miR-2001 | AUGUGACCGAUAUAAUGGGCAU | 22 | 38.33 | 20.92 |
| spu-miR-278-5p | UGGAAUGAAAGCCUCGCCAAUC | 22 | 55.33 | 28.64 |
| spu-miR-9-3p | AUAAAGCUAGGUUACCAAAGAU | 22 | 60.00 | 31.03 |
| spu-miR-278-3p | UCGGUGGGACUUUCGUUCGAUU | 22 | 61.00 | 30.88 |
| spu-miR-4852 | AAUUCUAUCAUUUUGGCUGCAU | 22 | 78.67 | 41.27 |
| spu-miR-2011 | ACCAAGGUGUGCUAGUGAUGAC | 22 | 500.00 | 248.08 |
| spu-miR-125-3p | ACAGGUUGGUAUCUCAGGAAUU | 22 | 631.00 | 325.71 |
| spu-miR-9-5p | UCUUUGGUUAUCUAGCUGUAUG | 22 | 802.00 | 410.52 |
| spu-miR-153-3p | UUGCAUAGUCACAAAAGUGAUU | 22 | 1706.33 | 906.22 |
| spu-miR-200-5p | CAUCAUACUGGACAGCAUUGGA | 22 | 2654.67 | 1362.21 |
| spu-miR-4847 | UAAUGAUGGCGCGGUGCGGUGC | 22 | 3506.00 | 1902.39 |
| spu-let-7 | UGAGGUAGUAGGUUAUAUAGUU | 22 | 6961.00 | 3571.52 |
| spu-miR-375 | UUGUUCGUUCGGCUCGCGUCAA | 22 | 10442.00 | 5430.47 |
| spu-miR-2004 | UCACACACAACCACAGGAAGUU | 22 | 12090.67 | 6153.14 |
| spu-miR-29a | AAGCACCAGUUGAAAUCAGAGC | 22 | 13320.33 | 7146.20 |
| spu-miR-2012 | UAGUACUGGCAUAUGGACAUUG | 22 | 20244.33 | 10439.92 |
| spu-miR-125-5p | UCCCUGAGACCCUAACUUGUGA | 22 | 23805.00 | 12701.23 |
| spu-miR-34 | CGGCAGUGUAGUUAGCUGGUUG | 22 | 29303.33 | 15381.47 |
| spu-miR-1 | UGGAAUGUAAAGAAGUAUGUAU | 22 | 266969.00 | 135440.97 |
| spu-miR-184 | UGGACGGAGAACUGAUAAGGGC | 22 | 947961.00 | 479823.98 |
| spu-miR-2003-3p | CAGGUUAUGCCCUUUGGGUAGUA | 23 | 1.00 | 0.52 |
| spu-miR-92a | UAUUGCACUUGUCCCGGCCUACU | 23 | 17.33 | 9.21 |
| spu-miR-10 | AACCCUGUAGAUCCGAAUUUGUG | 23 | 70.00 | 39.08 |
| spu-miR-2007 | UAUUUCAGGCAGUAUACUGGUAA | 23 | 249.33 | 131.06 |
| spu-miR-71 | UGAAAGACAUGGGUAGUGAGAUU | 23 | 2640.00 | 1423.26 |
| spu-miR-2002-3p | UGAAUACAUCUGCUGGUUUUUAU | 23 | 2793.33 | 1439.96 |
| spu-miR-200-3p | UAAUACUGUCUGGUGAUGAUGUU | 23 | 43303.00 | 22430.70 |
| spu-miR-7 | UGGAAGACUAGUGAUUUUGUUGU | 23 | 483537.67 | 245439.18 |
| spu-miR-182 | UUUGGCAAUUGAUAGAAUUCACACU | 25 | 26.67 | 13.18 |
miRNA expression levels were estimated by TPM (transcript per million) through the Normalization formula: Normalized expression = mapped read count/Total reads*1000000.