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. 2018 Jun 25;7:e36157. doi: 10.7554/eLife.36157

Key resources table.

Reagent type (species)
or resource
Designation Source and reference Identifiers
Strain, strain background
(S. cerevisiae)
Strain background:
BY4741
Open Biosystems Cat#YSC1048
Strain, strain background
(S. cerevisiae)
Strain background:
BY4742
Open Biosystems Cat#YSC1049
Strain, strain background
(S. cerevisiae)
Strain background:
YBL574
Nakanishi et al. 2008,
PMID: 18622391
N/A
Antibody Anti H3pT11 Abcam Cat# ab5168,
RRID:AB_304759
Antibody Anti H3 Abcam Cat#Ab1791
RRID:AB_302613
Antibody Anti H3K4me3 EMD Millipore Cat#07–473
RRID:AB_1977252
Antibody Anti H4K16ac, Rabbit
polyclonal
Huang et al., 2014
PMID: 25512562
N/A
Antibody Anti CBP, Rabbit
polyclonal
Venkatesh et al., 2012
PMID: 22914091
N/A
Recombinant DNA reagent pFA6A-NatMX6 Euroscarf Cat#P30437
Recombinant DNA reagent pFA6a-6xGLY-V5-
kanMX6
Addgene Cat#20780
Commercial assay or kit KAPA HTP library
prep kit
KAPA Biosystems Cat#KK8234
Commercial assay or kit TruSeq Stranded Total
RNA Library Prep Kit
with Ribo-Zero Gold set B
Illumina Cat#RS-122–2302
Commercial assay or kit HiSeq SR Cluster Kit v4
cBot
Illumina Cat#GD-401–4001
Commercial assay or kit HiSeq SBS Kit v4 (50 cycles) Illumina Cat#FC-401–4001
Commercial assay or kit Glucose Colorimetric
Detection Kit
ThermoFisher
Scientific
Cat#EIAGLUC
Commercial assay or kit Acetate Colorimetric
Assay Kit
Sigma-Aldrich Cat#MAK086
Software, algorithm bcl2fastq 1.8.4 Illumina RRID:SCR_015058
Software, algorithm bowtie2 (2.2.0) PMID: 22388286 RRID:SCR_005476
Software, algorithm R (3.2.2) https://www.R-project.org/. RRID:SCR_001905
Software, algorithm DiffBind (2.0.9) PMID: 22217937 RRID:SCR_012918
Software, algorithm bedtools (2.26.0) PMID: 20110278 RRID:SCR_006646
Software, algorithm tophat (2.0.13) PMID: 23618408 RRID:SCR_013035
Software, algorithm edgeR (3.14.0) PMID: 19910308 RRID:SCR_012802
Software, algorithm UCSC genome browser PMID: 26590259 RRID:SCR_005780