Key resources table.
Reagent type (species) or resource |
Designation | Source and reference | Identifiers |
---|---|---|---|
Strain, strain background (S. cerevisiae) |
Strain background: BY4741 |
Open Biosystems | Cat#YSC1048 |
Strain, strain background (S. cerevisiae) |
Strain background: BY4742 |
Open Biosystems | Cat#YSC1049 |
Strain, strain background (S. cerevisiae) |
Strain background: YBL574 |
Nakanishi et al. 2008, PMID: 18622391 |
N/A |
Antibody | Anti H3pT11 | Abcam | Cat# ab5168, RRID:AB_304759 |
Antibody | Anti H3 | Abcam | Cat#Ab1791 RRID:AB_302613 |
Antibody | Anti H3K4me3 | EMD Millipore | Cat#07–473 RRID:AB_1977252 |
Antibody | Anti H4K16ac, Rabbit polyclonal |
Huang et al., 2014
PMID: 25512562 |
N/A |
Antibody | Anti CBP, Rabbit polyclonal |
Venkatesh et al., 2012
PMID: 22914091 |
N/A |
Recombinant DNA reagent | pFA6A-NatMX6 | Euroscarf | Cat#P30437 |
Recombinant DNA reagent | pFA6a-6xGLY-V5- kanMX6 |
Addgene | Cat#20780 |
Commercial assay or kit | KAPA HTP library prep kit |
KAPA Biosystems | Cat#KK8234 |
Commercial assay or kit | TruSeq Stranded Total RNA Library Prep Kit with Ribo-Zero Gold set B |
Illumina | Cat#RS-122–2302 |
Commercial assay or kit | HiSeq SR Cluster Kit v4 cBot |
Illumina | Cat#GD-401–4001 |
Commercial assay or kit | HiSeq SBS Kit v4 (50 cycles) | Illumina | Cat#FC-401–4001 |
Commercial assay or kit | Glucose Colorimetric Detection Kit |
ThermoFisher Scientific |
Cat#EIAGLUC |
Commercial assay or kit | Acetate Colorimetric Assay Kit |
Sigma-Aldrich | Cat#MAK086 |
Software, algorithm | bcl2fastq 1.8.4 | Illumina | RRID:SCR_015058 |
Software, algorithm | bowtie2 (2.2.0) | PMID: 22388286 | RRID:SCR_005476 |
Software, algorithm | R (3.2.2) | https://www.R-project.org/. | RRID:SCR_001905 |
Software, algorithm | DiffBind (2.0.9) | PMID: 22217937 | RRID:SCR_012918 |
Software, algorithm | bedtools (2.26.0) | PMID: 20110278 | RRID:SCR_006646 |
Software, algorithm | tophat (2.0.13) | PMID: 23618408 | RRID:SCR_013035 |
Software, algorithm | edgeR (3.14.0) | PMID: 19910308 | RRID:SCR_012802 |
Software, algorithm | UCSC genome browser | PMID: 26590259 | RRID:SCR_005780 |