Table 2.
List of genes found in the six CP genomes of Ligularia species.
| No. | Group of genes | Gene names | Amount |
|---|---|---|---|
| 1 | Photosystem I | psaA, psaB, psaC, psaI, psaJ | 5 |
| 2 | Photosystem II | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | 15 |
| 3 | Cytochrome b/f complex | petA, petB∗, petD∗, petG, petL, petN | 6 |
| 4 | ATP synthase | atpA, atpB, atpE, atpF∗, atpH, atpI | 6 |
| 5 | NADH dehydrogenase | ndhA∗, ndhB∗ (×2), ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK | 11 |
| 6 | RubisCO large subunit | rbcL | 1 |
| 7 | RNA polymerase | rpoA, rpoB, rpoC1∗, rpoC2 | 4 |
| 8 | Ribosomal proteins (SSU) | rps2, rps3, rps4, rps7 (×2), rps8, rps11, rps12∗∗ (×2), rps14, rps15, rps16∗, rps18, rps19 | 12 |
| 9 | Ribosomal proteins (LSU) | rpl2∗ (×2), rpl14, rpl16∗, rpl20, rpl22, rpl23 (×2), rpl32, rpl33, rpl36 | 9 |
| 10 | Other genes | accD, clpP∗∗, matK, ccsA, cemA, infA | 6 |
| 11 | Proteins of unknown function | ycf1, ycf2 (×2), ycf3∗∗, ycf4, ycf15 | 5 |
| 12 | Transfer RNAs | 37 tRNAs (6 contain an intron, 7 in the IRs) | |
| 13 | Ribosomal RNAs | rrn4.5 (×2), rrn5 (×2), rrn16 (×2), rrn23 (×2) |
One or two asterisks after genes indicate that gene contains one or two introns, respectively.