Table 2.
Studies included in group 1 (neurological tissues)
| ID | Databank ID | Mice line | Tissue | Sampling time | Platform | Selected samples | Citation |
|---|---|---|---|---|---|---|---|
| H1 | GSE77192 | C57Bl/6 | Cerebellum | 6 dai | Agilent | 2 × 5 (out of 60) | n.a. |
| H2 | GSE77193 | C57Bl/6 | Cortex | 6 dai | Agilent | 2 × 5 (out of 60) | n.a. |
| HH | E-MTAB-5832 | C57Bl/6 | Cerebellum | 5 dai | Affymetrix | 2 × 6 (out of 29) | Lim et al. (2017) |
| PC | GSE53784 | SW | Brain | 5 to 6 dai | Affymetrix | 2 × 3 (out of 12) | Clarke et al. (2014) |
| YV | GSE72139 | C57Bl/6 | Hippocampus | 25 dai | Illumina | 4 + 2 (out of 12) | Vasek et al. (2016) |
The second column gives the databank ID from either GEO or ArrayExpress. The last column provides the number of samples selected from each study. Not each sample of a study qualified to be included into the meta-analysis. The first four studies had balances sizes of infected and control samples, study five had 4 samples in the infection group and 2 in the control group. For the last three studies, publications are available. Abbreviations: dai = days after infection; SW = Swiss Webster