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. 2016 Dec 13;1(6):1192–1204. doi: 10.1021/acsomega.6b00317

Table 2. Affinity Constants (Ka) of the Compounds for Binding to MTs and Effect of Single-Point Ligand Changes on the Binding Affinity of the Ligands for MTs.

Ka (107 M–1)
ligand 26 °C 27 °C 30 °C 32 °C 35 °C 37 °C 40 °C 42 °C ΔG 35 °C (kJ mol–1)
paclitaxel3 2.64 ± 0.2 2.19 ± 0.05 1.83 ± 0.1 1.81 ± 0.2 1.43 ± 0.2 1.07 ± 0.1 0.96 ± 0.1 0.94 ± 0.2 –42.2 ± 0.4
docetaxel3 6.95 ± 0.4 6.57 ± 0.5 5.42 ± 0.4 4.89 ± 0.4 3.93 ± 0.3 3.09 ± 0.2 2.89 ± 0.2 2.38 ± 0.1 –44.8 ± 0.2
dictyostatin3 35.5 ± 7 32.0 ± 5.5 24.8 ± 3 23.1 ± 3 19.2 ± 2.5 16.8 ± 2 14.1 ± 2 14.2 ± 2 –48.8 ± 0.4
2 0.0051 ± 0.003 0.0050 ± 0.003 0.0047 ± 0.003 0.0048 ± 0.0035 0.0041 ± 0.0026 0.0035 ± 0.002 0.0037 ± 0.001 0.0035 ± 0.002 –27.2 ± 1.2
discodermolide3 872 ± 82 837 ± 77 958 ± 134 704 ± 95 555 ± 111 526 ± 72 547 ± 60 321 ± 73 –57.4 ± 0.5
5 2.4 ± 1.2 2.5 ± 1.1 2.6 ± 1.2 2.4 ± 1.2 2.2 ± 0.4 2.2 ± 0.45 1.9 ± 0.25 1.87 ± 0.4 –43.3 ± 0.4
7 0.06 ± 0.02 0.05 ± 0.02 0.06 ± 0.01 0.07 ± 0.01 0.06 ± 0.01 0.06 ± 0.02 0.04 ± 0.01 0.04 ± 0.2 –34.4 ± 0.4
8 2.1 ± 0.4 1.9 ± 0.5 1.7 ± 0.3 1.7 ± 0.4 1.6 ± 0.2 1.4 ± 0.2 1.4 ± 0.2 1.2 ± 0.3 –42.5 ± 0.3
10 0.62 ± 0.3 0.66 ± 0.3 0.57 ± 0.2 0.62 ± 0.25 0.54 ± 0.2 0.51 ± 0.2 0.49 ± 0.2 0.45 ± 0.2 –39.7 ± 0.8
11 0.33 ± 0.05 0.36 ± 0.1 0.29 ± 0.09 0.27 ± 0.07 0.28 ± 0.05 0.25 ± 0.01 0.3 ± 0.02 0.23 ± 0.02 –38.0 ± 0.4
13 1.13 ± 0.3 1.12 ± 0.3 0.98 ± 0.2 0.95 ± 0.15 0.73 ± 0.1 0.71 ± 0.1 0.56 ± 0.1 0.58 ± 0.08 –40.4 ± 0.3
14 0.07 ± 0.03 0.055 ± 0.02 0.043 ± 0.01 0.04 ± 0.006 0.033 ± 0.005 0.025 ± 0.004 0.029 ± 0.004 0.028 ± 0.01 –32.5 ± 0.4
15 0.29 ± 0.1 0.29 ± 0.1 0.3 ± 0.1 0.33 ± 0.07 0.32 ± 0.1 0.33 ± 0.2 0.4 ± 0.2 0.28 ± 0.05 –38.3 ± 0.7
16 0.32 ± 0.2 0.4 ± 0.2 0.4 ± 0.1 0.4 ± 0.1 0.35 ± 0.08 0.35 ± 0.1 0.3 ± 0.1 0.25 ± 0.07 –38.6 ± 0.5
  Ka (107 M–1)
 
ligand 25 °C 30 °C 35 °C 40 °C ΔG 35 °C (kJ mol–1)
4 119.3 ± 3 68.5 ± 8 53.8 ± 4.8 34 ± 1.3 51.5 ± 0.2
6 88.1 ± 14 55 ± 3 32.6 ± 3.4 26.4 ± 2.5 50.2 ± 0.3
9 229.7 ± 22 175 ± 16.5 113.8 ± 3.25 63.4 ± 2 53.4 ± 0.1
12 106.4 ± 32 75.1 ± 4 65.2 ± 2.6 32.2 ± 1.5 51.9 ± 0.1
change description ΔΔG 35 °C (kJ mol–1)
1 → 4 removal of C6 methyl –2.7
1 → 5 reduction of C10=C11 double bond +5.5
12 → 13   +11.5
1 → 6 reduction of C2=C3 double bond –1.4
1 → 10 removal of C16 methyl +9.1
11 → 7   +3.6
1 → 11 epimerization of C9 hydroxyl +10.8
10 → 7   +5.3
15 → 16   –0.3
6 → 8 reduction of C4=C5 double bond +6.1
1 → 9 methylation of C9 hydroxyl –4.6
12 → 15 reduction of C4=C5 double bond and hydroxylation at C5 +13.6
12 → 14 introduction of docetaxel side chain at C7 +19.4
1 → 14 esterification of C7 hydroxyl +9.7