Table 1. Known variants in YRI-TSI comparison.

Table 1 shows p-values of sequences computed using likelihood ratio test at some well known sites of variation between populations. The (%) values denote fraction of individuals in the sample with the allele present. The p-values and % values are averaged over $k$-mers constituting the associated sequences.

Gene	SNP id	Description	Allele	p-value	%YRI	%TSI
ACKR1	rs2814778	Duffy antigen	C	9.72$\times {10}^{-114}$	84.39%	1.78%
SLC24A5	rs1426654	Skin pigmentation	G	8.45$\times {10}^{-144}$	87.39%	1.02%
SLC45A2	rs16891982	Skin/hair color	C	1.89$\times {10}^{-122}$	92.18%	4.67%
G6PD	rs1050829	G6PD deficiency	C	1.53$\times {10}^{-29}$	24.92%	1.02%
G6PD	rs1050828	G6PD deficiency	T	5.83$\times {10}^{-25}$	18.32%	0.00%