Table 4. Area under the Curve Values for Prediction of 10 Assays of Matrix 1a.
assay code | CCBM | NB | RF | SVM | single-task DNN | multitask DNN | GraphConv |
---|---|---|---|---|---|---|---|
A | 0.88 | 0.86 | 0.93 | 0.94 | 0.93 | 0.93 | 0.92 |
B | 0.64 | 0.68 | 0.70 | 0.69 | 0.67 | 0.66 | 0.69 |
C | 0.66 | 0.64 | 0.69 | 0.67 | 0.64 | 0.64 | 0.68 |
D | 0.62 | 0.63 | 0.62 | 0.62 | 0.63 | 0.60 | 0.65 |
E | 0.86 | 0.91 | 0.94 | 0.91 | 0.90 | 0.88 | 0.89 |
F | 0.82 | 0.82 | 0.87 | 0.88 | 0.87 | 0.86 | 0.87 |
G | 0.55 | 0.55 | 0.58 | 0.57 | 0.54 | 0.57 | 0.64 |
H | 0.70 | 0.75 | 0.77 | 0.76 | 0.74 | 0.75 | 0.76 |
I | 0.82 | 0.86 | 0.89 | 0.88 | 0.86 | 0.83 | 0.88 |
J | 0.84 | 0.88 | 0.93 | 0.94 | 0.93 | 0.90 | 0.94 |
Reported are AUC values for prediction of 10 assays (codes A–J) using different machine learning methods. For each assay, best results are indicated in bold.