Table 3.
Assembly metrics of the four merged assemblies
PICR | PIRC | IPCR | IPRC | |
---|---|---|---|---|
Scaffolds (No.) | 1,829 | 1,825 | 2,317 | 2,304 |
Length (Gb) | 2.37 | 2.37 | 2.36 | 2.36 |
Min length (bp) | 568 | 568 | 915 | 915 |
Max length (Mb) | 80.58 | 80.58 | 66.35 | 66.35 |
Mean length (kb) | 1295.21 | 1298.43 | 1019.33 | 1024.64 |
Median length (bp) | 37,019 | 38,181 | 13,201 | 14,241 |
N50 length (kb) | 20188.72 | 19582.71 | 21744.88 | 21262.79 |
N50 (No.) | 32 | 33 | 33 | 34 |
N90 length (kb) | 4400.57 | 4422.38 | 3545.61 | 3650.27 |
N90 (No.) | 121 | 122 | 122 | 122 |
Total N gaps (No.) | 3,237 | 3,250 | 72,528 | 72,536 |
Total Ns (%) | 0.12 | 0.12 | 1.13 | 1.13 |
Note. N, undefined base in scaffolds.