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. 2018 Jul 12;6:e5261. doi: 10.7717/peerj.5261

Figure 2. Staphopia Analysis Pipeline (StAP) Workflow.

Figure 2

The diagram describes basic operations of the pipeline on a single genome input (FASTQ file) before uploading into the Postgres relational database. Details of the programs used are in the ‘Methods’ section and in DOI 10.5281/zenodo.1255310. Green arrows indicate input from de novo assembled contigs; blue arrows were operations performed on pFASTQ files.