Table 2.
Summary table of 16 SNPs found between the genomes of E. xiangfangensis isolates Encl-44578 (reference) and Encl-922 (query).
| PROKKA name | Conserved domain classification | Enzyme commision number | Contig | SNP | Gene length (aa) | aa substitution |
|---|---|---|---|---|---|---|
| –a | – | – | 2 | T64623G | – | – |
| –a | – | – | 7 | T88097G | – | – |
| Methyl viologen resistance protein SmvA | MFS transporter | – | 8 | T51220C | 496 | M293T |
| D-amino acid dehydrogenase small subunit | D-amino acid dehydrogenase | 1.4.99.1 | 23 | A46893G | 432 | S395S |
| NADP-dependent malic enzyme | NADP-dependent malic enzyme | 1.1.1.40 | 2 | A296564G | 759 | N584N |
| Glyoxylate/hydroxypyruvate reductase A | Glyoxylate/hydroxypyruvate reductase A | 1.1.1.79 | 4 | G113111A | 312 | R267H |
| Ribonuclease E | Ribonuclease E | 3.1.26.12 | 4 | T156395C | 1035 | H685R |
| Hypothetical protein | – | – | 38 | C784A | 369 | T239N |
| Hypothetical protein | Similar to protein YjaG | – | 39 | A24170G | 196 | I61V |
| Low-affinity gluconate transporter | Low-affinity gluconate transporter | – | 6 | T100479C | 421 | S277P |
| Arabinose operon regulatory protein | DNA-binding transcriptional regulator | – | 12 | A66284G | 281 | N193S |
| Anaerobic dimethyl sulfoxide reductase chain B | DMSO_dmsB family protein | – | 35 | T1976G | 205 | K120Q |
| Tail length tape measure protein | COG5281 and Phage_HK97_TLTM domain-containing protein | – | 5 | G24809A | 1154 | L824L |
| Tail length tape measure protein | COG5281 and Phage_HK97_TLTM domain-containing protein | – | 5 | T24845C | 1154 | A836A |
| Tail length tape measure protein | COG5281 and Phage_HK97_TLTM domain-containing protein | – | 5 | C24893A | 1154 | G852G |
| Terminase-like family protein | P family protein | – | 26 | G7615T | 589 | R485L |
a
The first two SNPs are located in intergenic regions.