BifA regulated-biofilm formation is a primary mechanism to defend exogenous H2O2 exposure and closely correlates to cellular oxidative stress. Mn2+ ion and H2O2 represent 2 types of environmental factors, a trace nutrient substrate and an oxidative stress, respectively. Four genes that encode MCO, Mn2+ transporter, SOD and BifA were assayed for their expression during bacterial growth following exposure to the two environmental factors Mn2+ ion and H2O2 on the growth, Mn2+ acquisition, anti-oxidative system and biofilm formation in P. putida MnB1. Exogenous Mn2+ promoted Mn2+ uptake and acquisition. An increase in intracellular Mn2+ may act as nutrient substrate promoting microbial growth. Alternatively, Mn2+ may function as a cofactor for important enzymes, such as SOD, which scavenges ROS. Mn oxide, catalyzed by MCO is a barrier to protect from invasion, heavy metal and oxidative damage. Mn2+ may target Mn2+-responsive regulators to inhibit biofilm formation by BifA up-regulation. Decrements in intracellular anti-oxidative system and the inhibition of biofilm formation suggests that Mn2+ favors the microbial growth but suppresses biofilm development. Exogenous H2O2 triggers intracellular ROS over-production, but does not significantly affect the proliferation of P. putida MnB1. Bio-degradation of exogenous H2O2 and quick recovery of proliferative capacity at high H2O2 levels are due to CAT activity. In contrast to the activation of anti-oxidative system, promotion of the biofilms by down-regulation of BifA gene or the blockade of BifA activity suggests that biofilm formation may be a primary mechanism by which P. putida MnB1 defends unfavorable environmental factors. Therefore, BifA-mediated biofilm formation may be more sensitive than anti-oxidative system in response to Mn2+ ion and H2O2 in P. putida MnB1. The sensitivity of BifA-mediated biofilm formation may highlight its role in the adaption of microbes to environment stress. MCO, Manganese oxidase; MntABC, ABC-Type manganese transporter; SOD, Superoxide dismutase; CAT, Catalase; PDE, Phosphodiesterase; ROS, Reactive oxygen species.