Table 1:

Summary of A. nanus genome annotation

Method	Software and gene set	Gene number
Ab initio based	Genscan	26,702
	Augustus	43,844
	GlimmerHMM	42,368
	GeneID	45,561
	SNAP	55,094
Homology based	GeMoMa
	Arachis duranensis	27,630
	Cicer arietinum	29,229
	Phaseolus vulgaris	27,554
	Glycine max	31,559
RNA-seq based	PASA	43,810
	TransDecoder	68,687
	GeneMarkS-T	44,944
Integration	EVM	37,173