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. 2018 Feb 27;9(1):37–48. doi: 10.5598/imafungus.2018.09.01.04

Table 4.

Gene diversity, divergence and rate heterogeneity of the mitochondrial genes (nad3, nad5, nad6, atp6 and cox2) examined in this study.

Gene Diversity and Divergencea Rate heterogeneityb
π π (%) Dxy Dxy (%) Da Da (%)
atp6 0.00569 0.5 0.02032 2 0.01428 1 0.01
nad3 0.00934 0.9 0.01116 1 0.00318 0.3 0.58
nad5 0.00429 0.4 0.0102 1 0.00696 0.6 0.30
nad6 0.01015 1 0.00967 0.9 0.0046 0.4 0.46
cox2 0.00627 0.6 0.01882 1.8 0.01569 1.5 0.01

aSequence diversity (Nei 1987) and divergence (Nei 1987) for each dataset were determined using DNAsp ver. 5 (Librado & Rozas 2009). π = the average number of nucleotide differences per site between two sequences, Dxy = the average number of nucleotide substitutions per site between populations, Da = the number of net nucleotide substitutions per site between populations. π, Dxy, and Da values were converted to percentages for comparative purposes.

bThe shape of the gamma distribution which indicate the pattern of among-site rate heterogeneity for all gene datasets were inferred by with jModeltest (Posada 2008).