Table 2.

Results of comparison CNV–SNVs in cases and controls

		Cases	Controls	P-value
Number of CNV–SNVs per 108 bp	All CNVs	18.9	15.0	0.167
	Del	11.4	7.8	0.172
	Dup	31.6	26.8	0.292
Cumulative predicted deleteriousness per 108 bp	All CNVs	7.17	4.40	0.071
	Del	5.81	1.51	0.009
	Dup	9.49	9.16	0.369
Average predicted deleteriousness per CNV–SNV	All CNVs	0.38	0.29	0.141
	Del	0.51	0.19	0.074
	Dup	0.30	0.34	0.533

P-values were obtained by 10 000 random permutations of case-control status.