Table 2. Dataset overview Overview of the size and complexity of each video-track entry of LTDB.
|
DATASET SIZE |
VOXEL SIZE |
D. TYPE |
SNR |
COMPLEXITY |
CHALLENGES |
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CS | W | H | D | T | xy | z | t | bit | C | CH0 | CH1 | CH2 | CH3 | DIST | AT | Pla | Con | BG | Flu | Vel | A/D | Mov | Ins | Lar | Spf | Den |
| The columns in the group DATASET_SIZE report the digital size of the 4D data (W: width, H: height, D: Depth, T: number of time instants). The columns in group VOXEL_SIZE express the physical size of each voxel(xy: along the axes x and y [um], z: distance between two image planes [um], t: time interval between to time instants [s]). The columns in the group D.TYPE (Data type) report the bit depth (bit), and the number of channels included. The columns in the group SNR report the average (over time) of the Signal to Noise Radio (SNR) for each channel in the video. When a cell population in not visible in a specific channel these values tends to 0 (empty if the channel does not exist in the current video). The SNR values of the channels in which a cell population is expected to be visible are in bold. The columns in COMPLEXITY group report the average minimum distance between cells (DIST) and the average number of cell present in each time instant (AT). The columns in the CHALLENGES group report the main challenges (bold x) and the secondary challenges included (regular x). Pla: high plasticity, Con: contacts, BG: high background/low SNR/presence of cell debris, Flu: fluorescence variation, Vel: high migration velocity, A/D: appearing/disappearing objects, Mov: movement of the sample, Ins: instabilities of the laser, Lar: large areas, Spf: channel specificity, Den: high density. | ||||||||||||||||||||||||||
| 001_a | 127 | 83 | 11 | 31 | 1.15 | 4 | 15 | 12 | 4 | 0.1 | 0.6 | 7.7 | 0.3 | 1 | x | x | ||||||||||
| 002_a | 116 | 87 | 11 | 120 | 1.15 | 4 | 15 | 12 | 4 | 0.2 | 1.0 | 11.5 | 0.2 | 1 | x | x | x | |||||||||
| 003_a | 116 | 86 | 11 | 120 | 1.15 | 4 | 15 | 12 | 4 | 0.2 | 0.6 | 9.6 | 0.3 | 1 | x | x | x | x | ||||||||
| 004_a | 279 | 197 | 18 | 20 | 0.50 | 2 | 60 | 14 | 3 | 14.4 | 0.1 | 17.0 | 1 | x | x | x | ||||||||||
| 005_a | 241 | 200 | 14 | 29 | 0.43 | 3 | 32 | 14 | 1 | ## | 12±3 | 1 | x | |||||||||||||
| 006_a | 124 | 134 | 11 | 120 | 1.15 | 4 | 15 | 12 | 4 | 0.1 | 0.8 | 9.7 | 0.2 | 50±19 | 2 | x | x | |||||||||
| 007_a | 300 | 320 | 14 | 29 | 0.43 | 3 | 32 | 14 | 1 | ## | 11±4 | 12 | x | x | ||||||||||||
| 008_a | 124 | 112 | 10 | 119 | 0.80 | 2 | 25 | 14 | 1 | ## | 36±9 | 2 | x | |||||||||||||
| 009_a | 108 | 76 | 11 | 115 | 0.80 | 2 | 25 | 14 | 2 | ## | 1.3 | 10±2 | 4 | x | ||||||||||||
| 010_a | 148 | 279 | 18 | 26 | 0.50 | 2 | 60 | 14 | 3 | 2.5 | 0.5 | 3.0 | 14±6 | 3 | x | x | x | |||||||||
| 011_a | 218 | 187 | 16 | 60 | 0.85 | 2 | 30 | 14 | 3 | 6.6 | 0.4 | 0.2 | 47±25 | 3 | x | x | x | |||||||||
| 012_a | 105 | 69 | 14 | 61 | 0.47 | 4 | 20 | 12 | 1 | 4.3 | 13±16 | 2 | x | |||||||||||||
| 013_a | 256 | 144 | 14 | 39 | 0.27 | 2 | 30 | 14 | 3 | ## | 0.2 | ## | 1 | x | x | |||||||||||
| 014_a | 142 | 115 | 13 | 242 | 0.80 | 3 | 15 | 8 | 3 | ## | 1.7 | 8.2 | 50±12 | 3 | x | x | x | x | ||||||||
| 015_a | 279 | 116 | 10 | 220 | 0.50 | 3 | 12 | 8 | 3 | 0.5 | 12.6 | 0.8 | 1 | x | x | x | ||||||||||
| 016_a | 279 | 116 | 10 | 220 | 0.50 | 3 | 12 | 8 | 3 | 2.8 | 0.4 | 6.5 | 1 | x | x | x | x | x | ||||||||
| 017_a | 163 | 132 | 10 | 128 | 0.50 | 3 | 12 | 8 | 3 | 8.1 | 1.7 | 9.2 | 28±14 | 2 | x | x | x | |||||||||
| 018_a | 143 | 135 | 14 | 60 | 0.56 | 3 | 30 | 14 | 4 | 2.8 | 0.1 | 0.2 | 0.1 | 10±2 | 11 | x | x | x | ||||||||
| LTDB | W | H | D | T | xy | z | t | bit | C | CH0 | CH1 | CH2 | CH3 | DIST | AT | Pla | Con | BG | Flu | Vel | A/D | Mov | Ins | Lar | Spf | Den |
| 001_a | 556 | 556 | 18 | 60 | 0.50 | 2 | 60 | 14 | 3 | 4.0 | 0.3 | 4.9 | 15±7 | 12 | x | x | x | x | x | x | ||||||
| 002_a | 556 | 556 | 18 | 59 | 0.50 | 2 | 60 | 14 | 3 | 3.5 | 0.3 | 4.7 | 13±5 | 14 | x | x | x | x | x | x | ||||||
| 003_a | 391 | 352 | 20 | 71 | 0.50 | 2 | 13 | 14 | 3 | 14.3 | 0.2 | 6.9 | 20±14 | 6 | x | x | x | |||||||||
| 004_a | 555 | 555 | 14 | 135 | 0.80 | 3 | 15 | 8 | 3 | 10.7 | 1.2 | 11.3 | 36±12 | 7 | x | x | x | x | x | x | ||||||
| 004_b | 555 | 555 | 14 | 135 | 0.80 | 3 | 15 | 8 | 3 | 6.6 | 16.7 | 5.7 | 29±36 | 1 | x | x | x | x | ||||||||
| 005_a | 555 | 555 | 15 | 131 | 0.80 | 3 | 15 | 8 | 3 | 8.6 | 2.2 | 11.3 | 43±14 | 7 | x | x | x | x | x | |||||||
| 005_b | 555 | 555 | 15 | 131 | 0.80 | 3 | 15 | 8 | 3 | 6.6 | 11.0 | 5.2 | 83±27 | 2 | x | x | x | x | ||||||||
| 006_a | 555 | 555 | 14 | 138 | 0.80 | 3 | 15 | 8 | 3 | 4.9 | 1.1 | 10.9 | 120±10 | 3 | x | x | x | |||||||||
| 007_a | 555 | 555 | 15 | 93 | 0.80 | 3 | 15 | 8 | 3 | 3.5 | 1.1 | 8.7 | 34±6 | 8 | x | x | x | x | x | |||||||
| 007_b | 555 | 555 | 15 | 93 | 0.80 | 3 | 15 | 8 | 3 | 21.9 | 3.1 | 6.1 | 15±5 | 29 | x | x | x | x | x | |||||||
| 008_a | 524 | 518 | 14 | 39 | 0.27 | 2 | 30 | 14 | 3 | 15.8 | 0.1 | 8.5 | 1 | x | x | |||||||||||
| 009_a | 391 | 352 | 20 | 23 | 0.50 | 2 | 14 | 14 | 3 | 10.0 | 0.1 | 5.8 | 55±15 | 4 | x | x | x | |||||||||
| 010_a | 555 | 555 | 10 | 120 | 0.80 | 2 | 30 | 14 | 2 | 2.9 | ## | 16±2 | 23 | x | x | |||||||||||
| 011_a | 725 | 725 | 10 | 45 | 0.38 | 2 | 40 | 14 | 2 | 40.1 | 1.1 | 16±2 | 9 | x | ||||||||||||
| 012_a | 512 | 512 | 11 | 89 | 1.15 | 4 | 15 | 12 | 4 | 0.7 | 8.5 | 0.1 | 0.0 | 80±6 | 4 | x | x | x | x | |||||||
| 012_b | 512 | 512 | 11 | 89 | 1.15 | 4 | 15 | 12 | 4 | 0.1 | 1.9 | 11.5 | 0.1 | 16±5 | 39 | x | x | x | x | x | x | |||||
| 013_a | 512 | 512 | 11 | 120 | 1.15 | 4 | 15 | 12 | 4 | 0.0 | 0.5 | 15.4 | 0.2 | 10±3 | 58 | x | x | x | x | x | x | |||||
| 014_a | 257 | 257 | 11 | 241 | 0.60 | 4 | 15 | 12 | 4 | 0.1 | 0.5 | 0.2 | 3.2 | 14±6 | 6 | x | x | x | x | x | ||||||
| 014_b | 257 | 257 | 11 | 241 | 0.60 | 4 | 15 | 12 | 4 | 4.8 | 0.2 | 0.2 | 0.1 | 12±3 | 14 | x | x | x | x | x | ||||||
| 015_a | 523 | 523 | 16 | 61 | 0.38 | 4 | 20 | 14 | 4 | 0.1 | ## | 6.3 | 0.1 | 20±5 | 12 | x | x | x | x | x | x | x | ||||
| 016_a | 379 | 355 | 10 | 220 | 0.50 | 3 | 12 | 8 | 3 | 5.7 | 0.9 | 12.6 | 11±4 | 15 | x | x | x | x | x | |||||||
| 017_a | 404 | 214 | 14 | 183 | 0.50 | 3 | 15 | 8 | 3 | 14.7 | 1.0 | 31.8 | 9±2 | 33 | x | x | x | x | x | |||||||
| 017_b | 404 | 214 | 14 | 183 | 0.50 | 3 | 15 | 8 | 3 | 0.9 | 8.4 | 0.4 | 12±3 | 18 | x | x | x | x | x | x | ||||||
| 018_a | 555 | 555 | 22 | 36 | 0.80 | 3 | 42 | 14 | 2 | 0.2 | ## | 104±9 | 5 | x | x | |||||||||||
| 019_a | 430 | 409 | 22 | 80 | 0.80 | 3 | 30 | 14 | 3 | 4.2 | 0.4 | 11.3 | 32±21 | 6 | x | x | x | |||||||||
| 020_a | 351 | 354 | 11 | 60 | 0.80 | 3 | 30 | 14 | 4 | 1.0 | 7.6 | 1.6 | 0.1 | 1 | x | |||||||||||