Skip to main content
Food Science and Biotechnology logoLink to Food Science and Biotechnology
. 2017 Dec 19;26(6):1625–1632. doi: 10.1007/s10068-017-0222-z

Identification and characterization of lactic acid bacteria isolated from traditional cone yoghurt

Kamil Bostan 1, Ayla Unver Alcay 2,, Semiha Yalçin 3, Ufuk Eren Vapur 4, Mustafa Nizamlioglu 5
PMCID: PMC6049714  PMID: 30263699

Abstract

Cone yoghurt is a yoghurt variety produced by adding only pine cones to milk without culture in a limited area of Turkey. The present study was conducted to identify and characterize lactic flora in traditional cone yoghurt. Morphological, cultural, physiological, biochemical, and genotypic characteristics were employed to identify lactic acid bacteria isolates from cones and cone yoghurts. Streptococcus salivarius subsp. thermophilus (S. thermophilus) and Lactobacillus delbrueckii subsp. bulgaricus (L. bulgaricus) were obtained from both cones and yoghurts. Among the isolates, L. plantarum was frequently isolated except for these two bacteria (S. thermophilus and L. bulgaricus). The results indicate that the cone yoghurt has a mixed microflora contrary to the yoghurt produced by the addition of a starter culture and S. thermophilus, and L. bulgaricus in cone yoghurt originates from the pine cones.

Keywords: Cone, Cone yoghurt, Lactic flora, RT-PCR

Introduction

Yogurt is a fermented dairy product produced by specifically inoculation of symbiotic cultures of Streptococcus salivarius subsp. thermophilus (S. thermophilus) and Lactobacillus delbruecki subsp. bulgaricus (L. bulgaricus) during fermentation [1]. It is widely consumed in many countries of the world both for its distinctive flavor and for aroma.

Streptococcus thermophilus, which is a bacterium of yoghurt, is an aerobic and facultative anaerobic organism that can be cultivated at 45–52 °C. It grows best between pH 6.0 and 6.5. L. bulgaricus is a homofermentative organism that grows best at 45 °C. The optimum pH value (5.2–5.5) for its growth is lower than that for the growth of S. thermophilus [13].

The main function of these bacteria found in yoghurt, called “yoghurt bacteria,” is to produce L(+) lactic acid by lactose fermentation. When a pure culture is inoculated in milk, S. thermophilus breakdown lactose into D(+) lactic acid. The decrease in pH and reduction in oxygen levels provides a suitable environment for the growth of L. bulgaricus. In addition, folic acid produced by S. thermophilus supports the growth of this bacterium. L. bulgaricus quickly converts lactose into D(−) lactic acid [3]. Due to the increased acidity, gradational dissolution of calcium phosphate in casein micelles results in the coagulation of milk. The coagulation begins at pH 5.3 and stops at pH 4.7 [1]. Lactic acid imparts a sour taste to yoghurt. In addition, released metabolites such as acetaldehyde, free aminoacides, acetone, acetoine, diacetyl, dimethyl sulfide, butanone, and low-carbon fatty acids contribute to the flavor and aroma of yoghurt [2].

All strains of yoghurt bacteria cannot provide the desired performance and quality of yoghurt; these properties are greatly affected by the type of bacterial strain [47]. In Turkey, industrial yoghurts are manufactured using commercial starter cultures obtained from international food culture suppliers. However, such yoghurts do not appeal to the tastebuds of consumers as much as homemade yoghurts.

There are various rumors about how yoghurt was first produced. It is believed that yoghurt was first made by mixing some crushed plant material into milk or adding dew collected on weeds to milk instead of culture. Yoghurt production is still being made by adding cones in a similar method in Simav district in the province of Kütahya in Turkey. A scientific study on the microflora of native plants used in yoghurt production was conducted by Michaylova et al. [8]. They isolated L. bulgaricus and S. thermophilus from plant samples collected from areas far from human settlements. These isolates were inoculated in milk for obtaining experimental yoghurt. Authors reported that the properties of experimental yoghurt were similar to those of commercial yoghurt. Tavşanli et al. [9] who studied the proteolytic activity of yoghurt bacteria were able to produce yoghurt using L. delbrueckii spp. and S. thermophilus strains isolated from plants, rainwater, and dew.

In Turkey, there is a type of yoghurt fermented only by adding pine cones to milk without culture called “cone yoghurt.” Cone yoghurt has been traditionally produced for many years by a limited number of producers in some mountain villages of Kutahya and Eskisehir in Turkey. When preparing this type of yoghurt, preboiled milk is cooled to 42–43 °C. Green cones collected from pine trees in the region are added to the milk, and the mixture is left to ferment for 3–4 h until gel formation. The formed gel is infused into another boiled–cooled milk. This process is repeated three or four times until the desired yoghurt characteristics are attained. No study or publication has previously reported traditional cone yoghurt. This research was performed to identify lactic acid bacteria isolated from cones and cone yoghurt and determine the microorganisms that play a role in yoghurt fermentation.

Materials and methods

Cone yoghurt

In June–December 2015, 12 cone yoghurt samples were purchased from a company engaged in yoghurt manufacturing in Simav district in the province of Kütahya in Turkey. The samples were sent to a laboratory under cold conditions.

Pine cones

During spring, green cones were collected from red pine trees (Pinus brutia Ten.) in Simav district in the province of Kütahya. Twenty cones were obtained using sterile gloves and transported to the laboratory in sterile jars under appropriate conditions.

Experimental cone yoghurt production

Filtered fresh raw milk was first heat treated at 85 °C for 30 min and then cooled to 44 °C. According to the method used by local producers, one cone per liter was added to milk. The milk with cones was incubated at 44 °C for approximately 3–4 h until coagulation. The coagulation was retained in a refrigerator for a day and then added into heat-treated–cooled milk in a 5% ratio. At the end of incubation at 44 °C, the acquired coagulation was cooled. The same procedure was repeated twice. In each inoculation, the coagulation produced the previous day was used to inoculate fresh milk. On the final (fourth) day, a more cohesive coagulation similar to traditional yoghurt in terms of texture, flavor, and aroma formed at the end of incubation and was cooled. Cone yoghurts were then stored in a refrigerator for 15 days.

Isolation and identification of lactic acid bacteria from yoghurt and cones

The samples were aseptically weighed, homogenized, and plated on Man–Rogosa–Sharpe agar (MRS, Merck, 110 660), Medium 17 (M17, Merck, 115108), and Lactobacillus Streptococcus Agar (HiMedia M582) differential plates from dilutions prepared using quarter-strength Ringer’s solution Merck, 115525). Plates were incubated under anaerobic conditions at 37 and 45 °C for 24–48 h. Anaerobic conditions were created in airtight jars (Merck, 116387) containing O2-absorbing and CO2-releasing sachets (AnaeroGen, Oxoid, AN0025). Anaerobiosis was checked using Anaerotest strips (Merck, 115112). For analysis of the cones, one sample was put into a sterile jar containing 100 mL of sterile 0.9% NaCl solution. The jar was placed for 5 min on a shaker. The rinsing water was used to inoculate on to the abovementioned media. Plates were incubated under the same conditions.

For isolation, selected typical colonies that grew on plates were inoculated onto the same medium using the streak-plating method. After incubation, single bacterial colonies were isolated and subcultured in MRS broth (Merck, 1.10661) and M17 broth (Merck, 1.15029). Isolates were inspected for purity of growth by looking at morphology under a phase-contrast microscope. If any contamination was determined, cultures were restreaked to ensure purity prior to testing. First, Gram reaction, cell morphology, and catalase activity of pure isolates were determined. Gram-positive, catalase-negative cocci and rods were defined as potential lactic acid bacteria and tested for growth at different temperatures (15 and 45 °C), growth in 4.0 and 6.5% NaCl broth, and gas production from glucose [3, 10]. The selected strains were identified using the API 50 CH test kit (BioMerieux) microtest system [8].

PCR analysis

Streptococcus thermophilus and L. bulgaricus isolates were confirmed by PCR. All genomic DNA extraction was performed using DNA-Easy Bacterial DNA Isolation Kit (Bio-Speedy, BS-19-100, Turkey) according to the manufacturer’s instructions. The amount of genomic DNA extracted was measured by spectrophotometry (Epoch Microplate Spectrophotometer) and tested for purity and quantity. The extracted DNA was maintained at −20 °C until analysis. Primers and probes used in this study were designed with Primer3 (v.0.4.0) program and synthesized by Bioeksen AR-GE Technologies (Turkey) [11].

The 224 bp long lacZ gene (accession EU513599) region was amplified for defining S. thermophilus with primer pairs and probe: F 5′-TCGTCCACCTCAAGTTCCTC-3′, R 5′-ACGATAAACAGCTACCGCCA-3′, 5′-FAM-TCCAAGGGGTTGCTACTTCCA-TAMRA-3′; the 238 bp long addA gene (accession AJ252015) region was amplified for defining L. bulgaricus with primer pairs and probe: F 5′-CTCATCAACCGGGGCTTTGT-3′, R 5′-CAGCTCCCGCATCTCATCTT-3′, 5′-FAM-AACAAGAGCGGCGGCTTTGG-TAMRA-3′. All PCR reaction mixtures were prepared using 5 μL 1× PCR buffer (Bioeksen AR-GE Tech.) and 0.5 μM of each primer, 1 U Proofreading Hot-Start Taq DNA Polymerase, 0.5 μM Probe, and 5 ng/μL DNA template for a total 10 μL reaction mixture. S. thermophilus ATCC 19258 and L. bulgaricus CETC 4005 reference strains were used as a positive control in real-time PCR reactions. Thermocycler (Agilent Stratagene Mx3000P) conditions were as follows: 95 °C for 3 min, 45 cycles of 95 °C for 15 s, 55 °C for 15 s, and 72 °C for 60 s.

16S rRNA-targeted DNA sequencing

The DNA samples extracted from representative isolates were used by sequencing of the 16S rRNA genes. F: 5′-AGAGTTTGATCTGGCTCAG-3′ and R: 5′-CCATGCACCACCTGTC-3′ primers were used for both S. thermophilus (accession NR_118998) and L. bulgaricus (accession LC063162). PCR amplification was performed by real-time PCR. Reaction mix was prepared with 5 μL 1× dye mix (including EvaGreen Dye, Bioeksen AR-GE Tech.) and 0.5 μM of each primer, 1 U Proofreading Hot-Start Taq DNA Polymerase and 5 ng/μL DNA template for a total 10 μL reaction mixture. The 16S rRNA gene amplifications were performed under the same temperature as mentioned above. The amplification results were evaluated based on Ct data received from the device in real time. This step was followed by a melting curve analysis from 55 to 95 °C and then cooling to room temperature.

After purification of all 16s rDNA PCR products of L. bulgaricus and S. thermophilus, PCR amplicons were sequenced by Sanger method using the ABI Prism 377 DNA sequencer (Applied Biosystems, USA). The DNA sequences were compared with the sequences in the GenBank database using internet-based BLAST program (http://blast.ncbi.nlm.nih.gov/Blast.cgi). In this study, ≥ 98% sequence similarities were accepted as the cutoffs [12].

Results and discussion

A total of 474 strains from cones, experimental yoghurt, and commercial yoghurt were isolated as potential lactic acid bacteria using the recommended media. According to the results of tests (morphology, Gram staining, growth at different temperatures, growth in different NaCl concentrations, and gas production from glucose), they were classified as Lactococcus spp., Pediococcus spp., Leuconostoc sp., Enterococcus sp., S. thermophilus, and Lactobacillus spp. (Table 1). Some of these isolates were identified using the API 50 CH test kit (Tables 2, 3, 4).

Table 1.

Distrubition of isolates from cone yoghurt and cones

Species Materials Total
Cone Experimental yoghurt Commercial yoghurt
Lactococcus spp. 19 38 24 81
Pediococcus spp. 30 29 22 81
Leuconostoc spp. 11 1 12
Enterococcus spp. 29 25 29 83
S. thermophilus 57 34 64 155
Lactobacillus spp. 14 34 14 62
Total 160 161 153 474

Table 2.

Cone-originated isolates identified with API 50 CH

Strain n Identification results
Species Number
Lactococcus spp. 9 La. lactis subsp. lactis 1 7
La. lactis subsp. lactis 2 2
Leuconostoc spp. 6 Le. mesenteroides subsp. cremoris 6
Streptococcus thermophilus 23 S. salivarius subsp. thermophilus 23
Lactobacillus spp. 14 L. delbrueckii subsp. bulgaricus 8
L. plantarum 1 4
Carnobacterium maltaromaticum 1
L. fructivorans 1

Table 3.

Commercial yoghurt-originated isolates identified with API 50 CH

Strain n Identification results
Species Number
Lactococcus spp. 7 La. lactis subsp. lactis 1 6
La. lactis subsp. lactis 2 1
Leuconostoc spp. 1 Le. mesenteroides subsp. cremoris 1
Streptococcus thermophilus 7 S. salivarius subsp. thermophilus 7
Lactobacillus spp. 28 L. delbrueckii subsp. bulgaricus 25
L. plantarum 1 3

Table 4.

Experimantal yoghurt-originated isolates identified with API 50 CH

Strain n Identification results
Species Number
Lactococcus spp. 6 La. lactis subsp. lactis 1 6
Streptococcus thermophilus 45 S. salivarius subsp. thermophilus 45
Lactobacillus spp. 9 L. delbrueckii subsp. bulgaricus 5
L. plantarum 1 4

In our study, 160 lactic acid bacteria strains were isolated from pine cones. Fifty-seven strains were identified to potentially be S. thermophilus. The 23 randomly selected isolates were identified as S. thermophilus (with 90% or greater assurance) based on the API 50 CH test.

The same strains were also confirmed by real-time PCR, which was preferred because it is more rapid and sensitive with a minimized risk of contamination [13]. To identify lactic acid bacteria in dairy products, molecular methods based on bacterial DNA amplification by real-time PCR have been successfully developed for L. bulgaricus and S. thermophilus [14].

Six selected isolates were further confirmed by applying sequence analysis. Eight of 14 Lactobacillus spp. strains from cones were identified as L. bulgaricus by the API 50 CH test; this was confirmed by real-time PCR. Three of these were subjected to 16s rRNA sequence analysis and found to be similar (99%) to L. bulgaricus. Although these bacteria have also been reported in other plant sources, our study is important from the viewpoint of the detection of S. thermophilus and L. bulgaricus for the first time in pine cones. This determination implies that bacteria in cone yoghurt originate from pine cones. Some authors have also reported that these two bacteria can be found in natural sources. A similar study on yoghurt production with plant material was conducted by Michaylova et al. [8]. They studied the isolation of L. bulgaricus and S. thermophilus from plant samples (Calendula officinalis, Capsella bursapastoris, Chrysanthemum, Cichorium intybus, Colchicum, Cornus mas, Dianthus, Galanthus nivalis, Hedera, Nerium oleander, Plantago lanceolata, Prunus spinosa, Rosa, Tropaeolum, etc.) collected from four geographical regions known for their high-quality yoghurt in Bulgaria. Plant samples were obtained from several sites that were away from human settlements to avoid potential contamination from homemade or commercial yoghurt. Bacterial growth was detected in 319 of 665 samples, and 202 strains containing 70 rod-shaped bacteria and 132 coccal bacteria were isolated from positive samples. In the mentioned study, most of the rods (63 of 70) were classified as L. bulgaricus, and the remaining seven rods were classified as L. helveticus. Eight and 124 of the coccal bacteria were identified as La. lactis and S. thermophilus, respectively. Tavsanli et al. [8] isolated L. delbrueckii subsp. and S. thermophilus strains from some plants, rainwater, and dewdrops, and used them in another study on the bacteriolytic activities of lactic acid bacteria.

Three hundred and fourteen strains were isolated from commercial cone yoghurt and experimental cone yoghurt samples in the present study. Ninety eight of the isolates were classified as S. thermophilus and 48 as Lactobacillus strains. Fifty-two representative S. thermophilus isolates (7 from experimental yoghurt and 45 from commercial yoghurt) were tested with API 50 CH and identified as S. thermophilus. Thirty-seven representative Lactobacillus were tested with API 50 CH, and 30 of them (5 from experimental yoghurt and 25 from commercial yoghurt) were identified as L. bulgaricus.

Seventy-four of 75 isolates identified as S. thermophilus and all the 38 isolates identified as L. bulgaricus strains by the API 50 CH test were also confirmed by PCR analysis.

Nucleotide base sequences of S. thermophilus and L. bulgaricus 16s ribosomal DNA (rDNA) provide an accurate basis for identification [15]. Twenty S. thermophilus (6 from cones, 8 from experimental yoghurt, and 6 from commercial yoghurt) and 11 L. bulgaricus (3 from cones, 5 from experimental yoghurt, and 3 from commercial yoghurt) isolates confirmed by PCR were also analyzed by 16s rRNA sequencing and compared to sequences in the GenBank (http://blast.ncbi.nlm.nih.gov/Blast.cgi). Seventeen S. thermophilus and 8 L. bulgaricus strains showed similarity rates of 98–100% (Table 5).

Table 5.

16s rRNA Gene sequencing similarity scores of selected isolates

Strain 16s sequence analyses results (% similarity) Accession number Origin
S. thermophilus 99 gb|HQ721249.1| Commercial yoghurt
S. thermophilus 99 gb|EU419603.1|
S. thermophilus 99 gb|EU419603.1|
L.bulgaricus 99 gb|KJ939317.1|
L. bulgaricus 99 gb|KJ868757.1|
L. bulgaricus 99 gb|CP013610.1|
L. bulgaricus 99 gb|HQ293103.1|
L. bulgaricus 99 gb|KJ026657.1|
S. thermophilus 99 ref|NR 074827.1| Experimental yoghurt
S. thermophilus 99 ref|NR 074827.1|
S. thermophilus 99 ref|NR 074827.1|
S. thermophilus 99 gb|EU419603.1|
S. thermophilus 99 ref|NR 074827.1|
S. thermophilus 100 gb|KJ890358.1|
S. thermophilus 99 ref|NR 074827.1|
S. thermophilus 100 gb|KJ890358.1|
S. thermophilus 98 gb|EU419603.1|
S. thermophilus 99 gb|KJ890358.1|
S. thermophilus 99 dbj|LC 096241.1| Pine cone
S. thermophilus 99 gb|EU419603.1|
S. thermophilus 99 gb|EU419603.1|
S. thermophilus 99 gb|HQ721249.1|
L. bulgaricus 99 gb|KJ026576.1|
L. bulgaricus 99 gb|HQ293060.1|
L. bulgaricus 99 gb|HQ293060.1|

According to the research conducted by Drancourt et al. [12], a 16s rDNA sequence similarity of 99% with the prototype strain sequence in GenBank was defined as identification to the species level; 16s rDNA sequence similarity of 97% with the prototype strain sequence in GenBank was defined as identification to the genus level. Janda and Abbott [16], in their recommended guidelines, suggested that a minimum of > 99%, and ideally > 99.5%, sequence similarity be used as the criteria for species identification.

The results of the study showed that yoghurt bacteria (S. thermophilus and L. bulgaricus) were present in pine cones and cone yoghurt microflora. The yoghurt bacteria cannot survive after heat treatment during yoghurt production. Therefore, the presence of these bacteria in yoghurt without starter culture refers to a subsequent contamination. In this study, isolation of yoghurt bacteria from cones and experimental yoghurt indicated that the origin of these bacteria is cones.

There is no study on microbiology of cone yoghurts produced without culture. However, a lot of study has been conducted in Turkey on artisanal and industrial yoghurt produced using culture. Aslim et al. [17] reported that the 20 strains of Streptococcus and 22 strains of Lactobacillus isolated from homemade and industrial yoghurt were identified as S. thermophilus and L. bulgaricus, respectively, from village yoghurt and commercial yoghurt. Erkus [18], who studied the characterization of yoghurt starter, isolated 66 cocci and 71 bacilli from artisanal yoghurt and reported that all the bacilli isolates were found to be L. bulgaricus, but cocci isolates showed highly variable sugar fermentation results and only seven of them were characterized as S. thermophilus according to biochemical identification. Aslim and Beyatli [19] determined that 73 of 81 strains of Lactobacillus isolated from the yoghurt samples collected from different regions of Turkey were defined as L. bulgaricus.

In our study, the results of isolation and identification showed that cone yoghurt has a complicated microflora. It was also determined other lactic acid bacteria as well as yoghurt bacteria (S. thermophilus and L. bulgaricus) and non-lactic acid bacteria are present in cone yoghurt. Isolates from the recommended media for lactic acid bacteria were classified as Lactococcus spp. (62 strains), Pediococcus spp. (51 strains), Enterococcus spp. (54 strains), and Leuconostoc spp. (1 strain). Some of these isolates were tested by API 50 CH. Thirteen representative Lactococcus isolates were identified as La. lactis subsp. lactis. One Leuconostoc isolate was identified as Le. mesenteroides subsp. cremoris. The same bacteria were also determined in cones. A total of 19 Lactococcus, 30 Pediococcus, and 11 Leuconostoc were isolated from pine cones. Nine representative Lactococcus isolates were identified as La. lactis subsp. lactis and six Leuconostoc isolates were identified as Le. mesenteroides subsp. cremoris. These findings provide information about the origin of lactic acid bacteria in yoghurt.

Enterococci are a part of the normal intestinal flora and frequently used as fecal indicator bacteria. If there is a contamination to milk during milking and processing, these bacteria can lead to various problems in fermented milk products because they are tolerant of a range of pH values. Enterococcus faecalis, E. feacium, and E. bovis are the main species isolated from contaminated fermented milk [20]. Although the presence of enterococci was associated with fecal contamination in the past, it is known that these bacteria may be available in environmental samples such as soil, plants, and insects. In the present study, 83 Enterococcus spp. (19 from cones, 25 from commercial yoghurt, and 29 from experimental yoghurt) were isolated from the medium for lactic acid bacteria. A selected isolate (from pine cone) was identified by sequence analysis. The 16s rRNA gene sequences showed 99% similarity with E. faecium in the database. An isolate identified as S. thermophilus by API 50 CH showed 99% 16s rRNA sequence similarity with E. durans. There are studies reporting that enterococci were present in classic yoghurt and could live for a long time [21, 22].

Lactobacillus plantarum is a short rod-shaped, gram-positive lactic acid bacterium. It can grow at temperatures between 15 and 45 °C and under acidic conditions with a pH as low as 3.2. L. plantarum is a facultative heterofermentative microorganism that ferments sugars to produce lactic acid, ethanol, or acetic acid [23]. It is commonly found in the intestines of humans and mammals. It is also present in many foodstuffs such as dairy products, vegetables (pickles, sauerkraut, sourdough, etc.) and meat sausages [24]. L. plantarum is considered as a safe probiotic because it helps to limit the colonization of the pathogenic bacteria in the intestine and has other beneficial effects on human health [2528]. In this study, four of 14 Lactobacillus spp. isolated from cones, three of 28 Lactobacillus spp. isolated from commercial yoghurt, and three of nine Lactobacillus spp. isolated from experimental yoghurt were identified as L. plantarum by the API 50 CH test. These results indicate that L. plantarum can play an important role in cone yoghurt and originates from the pine cones used in fermentation of milk. L. plantarum is capable of producing exopolysaccharides [27]. Exopolysaccharide-producing bacteria were used to improve the rheological properties, texture, and mouthfeel in fermented dairy products such as cheese and yoghurt [29].

Two of 14 rod-shaped isolates (from the pine cone samples) were identified as Carnobacterium maltaromaticum and L. fructivorans by the API 50 CH test. Carnobacterium is a gram-positive lactic acid bacterium and a member of the Leuconostocacea family. C. maltaromaticum is frequently isolated from the natural environment. This bacterium is able to grow at low temperatures, anaerobically, and under increased CO2 concentrations [30]. This opportunistic lactic acid bacterium is present in a low proportion in raw milk. It can grow in milk without coagulation because of a low production of L(+)-lactic acid from lactose due to a weak β-galactosidase activity with no competition from starter lactic acid bacteria. These species synthesize different flavoring compounds such as 3-methylbutanal [31]. Cailliez-Grimal et al. [32] reported that this bacterium was determined in various French soft-flowered or washed rind cheeses. C. maltaromaticum has attracted the attention of researchers because it can inhibit the growth of foodborne pathogens such as Listeria monocytogenes due to its ability to produce bacteriocins [33]. L. fructivorans obtained isolate from cone is known to be detrimental to products for acidic food like mayonnaise, salad dressings, vinegar preserves, sake [34, 35].

According to the results of this study, S. salivarius subsp. thermophilus and L. delbrueckii subsp. bulgaricus are available in cone yoghurt produced without culture addition. The number of lactobacilli is significantly lower than that of streptococci. Cone yoghurt has a rich and mixed microflora. In addition to yoghurt bacteria, other lactic acid and non-lactic acid bacteria are found in cone yoghurt. These bacteria also likely contribute to the development of the flavor and the formation of the cone yoghurt. Because L. plantarum comprises a significant proportion of the isolates, it may play an important role in yoghurt formation. Lactic acid bacteria in cone yoghurt originate from pine cones because the same bacteria are found in cones. These isolates, particularly yoghurt bacteria, should be evaluated in terms of their potential to be used as commercial yoghurt starter cultures by performing necessary tests and analyses.

References

  • 1.Yilmaz R, Temiz A. S. thermophilus ve L. bulgaricus’ un klasik ve molekuler yontemler kullanilarak tanımlanmasi ve karakterizasyonu. Orlab On-Line Mikrobiyoloji Dergisi. 1: 19–42 (2003)
  • 2.Rasic J, Kurmann JA. Microflora of yoghurt. Vol.1, pp 20-55. In Yoghurt: Scientic Grounds, Technology, Manufacture and Preparations. Technical Dairy Publishing House, Copenhagen, Denmark (1978)
  • 3.Vos P, Garrity G, Jones D, Krieg NR, Ludwig W, Rainey FA, Scheifer KH, Whitman WB. Bergey’s Manual of Systematic Bacteriology. 2. New York, USA: Springer-Verlag; 2009. pp. 464–722. [Google Scholar]
  • 4.Faber EJ, Kamerling JP. Vliegenthart JFG. Structure of the extracellular polysaccharide produced by L. bulgaricus 291. Carbohydr. Res. 2001;331:183–194. doi: 10.1016/S0008-6215(01)00012-X. [DOI] [PubMed] [Google Scholar]
  • 5.Faber EJ, van den Haak MJ, Kamerling JP. Vliegenthart JFG. Structure of the exopolysaccharide produced by S. thermophilus S3. Carbohydr. Res. 2001;331:173–182. doi: 10.1016/S0008-6215(01)00013-1. [DOI] [PubMed] [Google Scholar]
  • 6.Milci S, Yaygin H. Laktik asit bakterileri tarafından uretilen ekzopolisakkaritler ve sut urunlerindeki fonksiyonlari. Gida. 2005;30:123–129. [Google Scholar]
  • 7.Ma CJ, Wu ZJ, Chen ZJ, Du ZP, Sun KJ, Ma AM. Differentiation of S. thermophilus strains in commercial Direct Vat Set yoghurt starter. Food Sci. Biotechnol. 2013;24:987–991. doi: 10.1007/s10068-013-0174-x. [DOI] [Google Scholar]
  • 8.Michaylova M, Minkova S, Kimura K, Sasaki T, Isawa K. Isolation and characterization of L. bulgaricus and S. thermophilus from plants in Bulgaria. FEMS Microbiol. Lett. 2007;269:160–169. doi: 10.1111/j.1574-6968.2007.00631.x. [DOI] [PubMed] [Google Scholar]
  • 9.Tavsanli H, Elal Mus T, Cetinkaya F, Cibik R. Geleneksel tekniklerle uretilen yogurtlardan ve dogadaki bitkisel orneklerden izole edilen yogurt bakterilerinin bakteriyolitik aktiviteleri. Gida ve Yem Bilimi-Teknolojisi Dergisi. 2016;16:1–7. [Google Scholar]
  • 10.Collado MC. Herna´ndez M. Identification and differentiation of Lactobacillus, Streptococcus and Bifidobacterium species in fermented milk products with bifidobacteria. Microbiol. Res. 2007;162:86–92. doi: 10.1016/j.micres.2006.09.007. [DOI] [PubMed] [Google Scholar]
  • 11.Lick S, Drescher K, Heller KJ. Survival of L. bulgaricus and S. thermophilus in the terminal ileum of fistulated gottingen minipigs. Appl. Environ. Microbiol. 2001;67:4137–4143. doi: 10.1128/AEM.67.9.4137-4143.2001. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 12.Drancourt M, Bollet C, Carlioz A, Martelin R, Gayral JP, Raoult D. 16S ribosomal DNA sequence analysis of a large collection of environmental and clinical unidentifiable bacterial isolates. J. Clin. Microbiol. 2000;38:3623–3630. doi: 10.1128/jcm.38.10.3623-3630.2000. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 13.Mackay IM. Real-time PCR in the microbiology laboratory. Clin. Microbiol. Infect. 2004;10:190–212. doi: 10.1111/j.1198-743X.2004.00722.x. [DOI] [PubMed] [Google Scholar]
  • 14.Furet JP, Quenee P, Tailliez P. Molecular quantification of lactic acid bacteria in fermented milk products using real-time quantitative PCR. Int. J. Food Microbiol. 2004;97:197–207. doi: 10.1016/j.ijfoodmicro.2004.04.020. [DOI] [PubMed] [Google Scholar]
  • 15.Dong Y, Cui S, Li F, Yu H. Identification of Lactobacillus and S. thermophilus by PCR amplification and sequence analysis of 16S rRNA. Wei Sheng Yan Jiu. 2010;39:454–458. [PubMed] [Google Scholar]
  • 16.Janda JM, Abbott SL. 16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: pluses, perils, and pitfalls. J. Clin. Microbiol. 2007;45:2761–2764. doi: 10.1128/JCM.01228-07. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 17.Aslim B, Beyatli Y, Soran H, Mercan N, Durlu Ozkaya F, Yuksekdag ZN, Ediz N. Bazi laktik asit bakterilerinin ekzopolisakkarit uretimlerinin belirlenmesi. TUBITAK-TBAG 2090 (101 T 129), Ankara (2005)
  • 18.Erkus O. Isolation, phenotypic and genotypic characterization of yoghurt starter bacteria. MS Thesis, Graduate School of Engineering and Sciences of Izmir, Izmir, Turkey (2007)
  • 19.Aslim B, Beyatli Y. Koy ve kasaba yogurtlarindan izole edilen Lactobacillus bulgaricus suslarinin metabolik ve antimikrobiyal aktiviteleri üzerine bir arastirma. Gida. 1997;22:441–447. [Google Scholar]
  • 20.Giraffa G, Carminati D, Neviani E. Enterococci isolated from dairy products: a review of risks and potential technological use. J. Food Prot. 1997;60:732–738. doi: 10.4315/0362-028X-60.6.732. [DOI] [PubMed] [Google Scholar]
  • 21.Birollo GA, Reinheimer JA, Vinderola CG. Enterococci vs non-lactic acid microflora as hygiene indicators for sweetened yoghurt. Food Microbiol. 2001;18:597–604. doi: 10.1006/fmic.2001.0435. [DOI] [Google Scholar]
  • 22.Elmali M, Yaman H. Microbiological quality of yogurt consumed in Kars. J. Fac. Vet. Med. Istanbul Univ. 2005;31:19–24. [Google Scholar]
  • 23.Smetanková J, Hladíková Z, Valach F, Zimanová M, Kohajdová Z, Greif G, Greifová M. Influence of aerobic and anaerobic conditions on the growth and metabolism of selected strains of Lactobacillus plantarum. Acta Chim. Slov. 2012;5:204–210. [Google Scholar]
  • 24.Melgar-Lalanne G, Rivera-Espinoza Y, Hernández-Sánchez H. Lactobacillus plantarum: An overview with emphasis in biochemical and healthy properties. pp. 1-31. In: Lactobacillus: Classification, Uses and Health Implications. Pérez Campos A., Mena AL (eds). Nova Publishing, New York, USA (2012)
  • 25.Cebeci A, Gurakan C. Properties of potential probiotic Lactobacillus plantarum strains. Food Microbiol. 2003;20:511–518. doi: 10.1016/S0740-0020(02)00174-0. [DOI] [Google Scholar]
  • 26.Ko JS, Yang HR, Chang JY, Seo JK. Lactobacillus plantarum inhibits epithelial dysfunction and interleukin-8 secretion induced by tumor necrosis factor-α. World J. Gastroenterol. 2007;13:1962–1965. doi: 10.3748/wjg.v13.i13.1962. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 27.Caggianiello G, Kleerebezem M, Spano G. Exopolysaccharides produced by lactic acid bacteria: from health-promoting benefits to stress tolerance mechanisms. Appl. Microbiol. Biotechnol. 2016;100:3877–3886. doi: 10.1007/s00253-016-7471-2. [DOI] [PubMed] [Google Scholar]
  • 28.Sunanliganon C, Thong-Ngam D, Tumwasorn S, Klaikeaw N. Lactobacillus plantarum B7 inhibits Helicobacter pylori growth and attenuates gastric inflammation. World J. Gastroenterol. 2012;18:2472–2480. doi: 10.3748/wjg.v18.i20.2472. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 29.Duboc P, Mollet B. Applications of exopolysaccharides in dairy industry. Int. Dairy J. 2001;11:759–768. doi: 10.1016/S0958-6946(01)00119-4. [DOI] [Google Scholar]
  • 30.Leisner JJ, Laursen BG, Prevost H, Drider D, Dalgaard P. Carnobacterium: positive and negative efects in the environment and in foods. FEMS Microbiol. Rev. 2007;31:592–613. doi: 10.1111/j.1574-6976.2007.00080.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 31.Afzal MI, Ariceaga CCG, Lhomme E, Ali NK, Payot S, Burgain J, Gaiani C, Borges F, Revol-Junelles AM, Delaunay S, Cailliez-Grimal C. Characterization of Carnobacterium maltaromaticum LMA 28 for its positive technological role in soft cheese making. Food Microbiol. 2013;36:223–230. doi: 10.1016/j.fm.2013.05.008. [DOI] [PubMed] [Google Scholar]
  • 32.Cailliez-Grimal C, Edima HC, Revol-Junelles AM, Millière JB. Carnobacterium maltaromaticum: the only Carnobacterium species in French ripened soft cheeses as revealed by polymerase chain reaction detection. J. Dairy Sci. 2007;90:1133–1138. doi: 10.3168/jds.S0022-0302(07)71599-0. [DOI] [PubMed] [Google Scholar]
  • 33.Afzal MI, Jacquet T, Delaunay S, Borges F, Millière JB, Revol-Junelles AM, Cailliez-Grimal C. Carnobacterium maltaromaticum: Identification, isolation tools, ecology and technological aspects in dairy products. Food Microbiol. 2010;27:573–579. doi: 10.1016/j.fm.2010.03.019. [DOI] [PubMed] [Google Scholar]
  • 34.Smittle RB. Microbial safety of mayonnaise, salad dressings, and sauces produced in the United States: a review. J. Food Prot. 2000;63:1144–1158. doi: 10.4315/0362-028X-63.8.1144. [DOI] [PubMed] [Google Scholar]
  • 35.Kobayashi F, Ikeura H, Odake S, Tanimoto S, Hayata Y. Inactivation of Lactobacillus fructivorans suspended in various buffer solutions by low-pressure CO2 microbubbles. LWT-Food Sci. and Technol. 2012;48:330–333. doi: 10.1016/j.lwt.2012.04.011. [DOI] [Google Scholar]

Articles from Food Science and Biotechnology are provided here courtesy of Springer

RESOURCES