Table 1. LncRNA genes that behave as hosts or parent genes for miRNAs and miRNA families.
Sr. No. | lncRNA name | lncRNA TCGA RNA-seq regulation | miRNA name | miRNA TCGA microarray regulation | TCGA sample wise lncRNA-miRNA correlation | ||||
---|---|---|---|---|---|---|---|---|---|
log2 Fold Change | p value | FDR | log2 Fold Change | p value | coefficient (R) | p value | |||
1 | LINC00461 | 1.209 | 0.001 | 0.004 | hsa-miR-9-3p | 0.725 | <0.0001 | 0.380 | <0.0001 |
2 | RMST | 1.814 | 0.004 | 0.017 | hsa-miR-135a-5p | 1.106 | <0.0001 | 0.414 | <0.0001 |
3 | DNM3OS | 1.538 | 0.025 | 0.077 | hsa-miR-199a-3p | 0.923 | <0.0001 | 0.464 | <0.0001 |
4 | LINC00472 | 0.837 | 0.020 | 0.065 | hsa-miR-30a-5p | 1.051 | <0.0001 | 0.477 | <0.0001 |
5 | MIR155HG | 2.647 | <0.0001 | <0.0001 | hsa-miR-155-5p | 1.943 | <0.0001 | 0.554 | <0.0001 |
6 | BX537900/MIR124-2HG/LINC00966 | –3.348 | <0.0001 | <0.0001 | hsa-miR-124-3p | -5.962 | <0.0001 | 0.651 | <0.0001 |
7 | LOC100130155/MIR124-2HG/LINC0096 | –3.348 | <0.0001 | <0.0001 | hsa-miR-124-3p | -5.962 | <0.0001 | 0.651 | <0.0001 |
8 | MIR210HG | 1.907 | <0.0001 | 0.001 | hsa-miR-210-3p | 2.170 | <0.0001 | 0.712 | <0.0001 |
9 | MIR7-3HG | –3.299 | <0.0001 | <0.0001 | hsa-miR-7-5p | -3.734 | <0.0001 | 0.736 | <0.0001 |
10 | MIR17HG | 1.277 | 0.009 | 0.033 | hsa-miR-92a-3p | 1.206 | <0.0001 | 0.231 | 0.01 |
hsa-miR-17-3p | 0.811 | <0.0001 | 0.127 | 0.169 | |||||
hsa-miR-17-5p | 1.137 | <0.0001 | 0.062 | 0.4990 | |||||
hsa-miR-18a-3p | 0.087 | <0.0001 | 0.304 | 0.0008 | |||||
hsa-miR-18a-5p | 0.774 | <0.0001 | 0.028 | 0.755 | |||||
hsa-miR-19a-3p | 1.031 | <0.0001 | 0.177 | 0.011 | |||||
hsa-miR-19b-3p | 1.063 | <0.0001 | 0.161 | 0.079 | |||||
hsa-miR-20a-5p | 1.3455 | <0.0001 | 0.063 | 0.492 | |||||
11 | DLUE2 | 1.288 | <0.0001 | <0.0001 | hsa-miR-15a-5p | 1.466 | <0.0001 | 0.171 | 0.06 |
hsa-miR-16-5p | 1.160 | <0.0001 | 0.113 | 0.22 | |||||
13 | LINC00478 | 0.514 | 0.103 | 0.229 | hsa-let-7c-5p | 0.314 | <0.0001 | 0.420 | <0.0001 |
hsa-miR-99a-5p | 0.786 | <0.0001 | 0.503 | <0.0001 | |||||
hsa-miR-125b-5p | -0.133 | 0.0644 | 0.29 | 0.001 |