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. 2018 Jul 17;3(4):e00080-18. doi: 10.1128/mSystems.00080-18

FIG 3 .

FIG 3 

Damage patterns slightly increase within-sample diversity. Alpha diversity of 40-genome data sets was calculated by (A) Faith’s phylogenetic distance, (B) Shannon index, (C) observed species, and (D) Chao1 for full-output tables and tables filtered to remove species present at <0.1% abundance. A, ancient samples; M, modern samples; MPA2, MetaPhlAn2.