Table 5.
Viral HGT events detected by HGT-ID algorithm between paired TCGA HCC tumor and normal samples via WGS and RNA-Seq datasets
| Sample ID | WGS-T | WGS-N | RNA-T | RNA-N | Common HGT |
|---|---|---|---|---|---|
| TCGA-BW-A5NP | 11 | 0 | 2 | NA | 0 |
| TCGA-CC-5262 | 3 | 0 | 2 | NA | 2 |
| TCGA-CC-A1HT | 5 | 0 | 2 | NA | 2 |
| TCGA-DD-A1EH | 0 | 0 | 0 | 2 | NA |
| TCGA-DD-A1EI | 2 | 0 | 1 | 2 | 1 |
| TCGA-DD-A1EL | 17 | 0 | 1 | 2 | 1 |
| TCGA-G3-A3CK | 4 | 0 | 0 | NA | 0 |
T stands for primary solid tumor and N for matched solid normal tissue. Only 3 of the 7patients had RNA-Seq data for matched normal tissue. The “Common HGT” column contains the number of events that were identified in both WGS and RNA-Seq for the primary tumor (T)