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. 2018 Jun 12;7:727. [Version 1] doi: 10.12688/f1000research.14616.1

Table 1. P athL inker application programming interface (API) parameters.

The last column records whether an equivalent option is present in the user interface of the P athL inker app. T/F - True/False.

Parameter Type Description Present
in UI
sources String Node names separated by spaces
targets String Node names separated by spaces
k Integer Number of paths to compute
edgeWeightType String UNWEIGHTED, ADDITIVE, or PROBABILITIES
edgePenalty Integer Penalize low-weight paths with many edges
edgeWeightColumnName String Name of the Edge Table column that contains the edge
weights
allowSourcesTargetsInPaths T/F Allow sources and targets to be intermediate nodes in paths
includeTiedPaths T/F Include more than k paths if their score equals the kth path’s
score
treatNetworkAsUndirected T/F Ignore directionality when computing paths
skipSubnetworkGeneration T/F Return only the k shortest paths