Table 2.
General features of the S. yanoikuyae SHJ genome.
| Chromosome | pSES220 | pSES189 | Genome | |
|---|---|---|---|---|
| Size (bp) | 5,260,163 | 220,037 | 189,183 | 5,669,383 |
| GC content | 64.35 | 63.69 | 61.42 | 64.23 |
| Total genes | 4,990 | 222 | 190 | 5,402 |
| tRNA genes | 61 | 0 | 0 | 61 |
| rRNA genes | 12 | 0 | 0 | 12 |
| Other non-coding RNAs | 3 | 0 | 0 | 3 |
| Pseudo genes | 118 | 13 | 12 | 143 |
| Total number of CDSs | 4,796 | 209 | 178 | 5,183 |
| CDSs with assigned function | 3,538 | 126 | 111 | 3,775 |
| Hypothetical proteins | 1,258 | 83 | 67 | 1,408 |
| CDSs assigned to COGs | 3,250 | 117 | 85 | 3,452 |
| CDSs assigned to KEGG Ontoloty | 1,213 | 16 | 8 | 1,237 |
| CDSs assigned to GO function | 2,536 | 82 | 83 | 2,701 |
| CDSs with Pfam domains | 3,880 | 147 | 133 | 4,160 |
| CDSs with signal peptides | 674 | 10 | 15 | 699 |
| CDSs with transmembrane helices | 1,056 | 39 | 36 | 1,131 |