Table 3. Residues at amino acid sites of the SLAM and nectin-4 cell binding regions on the canine distemper virus H-protein isolated in South Africa in 2015/2016.
The accession number, host species, year and country of origin are indicated for each strain. Identical amino acids are indicated with a dash (-), varying amino acids are indicated by single letter amino acid codes.
| Accession number/species/year/origin | SLAM binding region | Nectin-4 binding region | |||||
|---|---|---|---|---|---|---|---|
| 519 | 530 | 549 | 478 | 479 | 537 | 539 | |
|
SOUTHERN AFRICA Domestic dog |
|||||||
| MF467747/Z10/dog/2016/SA | R | N | Y | V | L | Y | Y |
| a FJ461723.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461698.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461718.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461722.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461704.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461706.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461721.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461695.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461697.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461693.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461703.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461715.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461714.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461699.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461716.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461719.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461720.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461713.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461705.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461696.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461724.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461707.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461711.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461694.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461700.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461717.1/dog/2007/SA | - | - | - | - | - | - | - |
| a FJ461712.1/dog/2007/SA | - | - | - | - | - | - | - |
| Wild canid | |||||||
| MF467738/Z15/African wild dog/2016/SA | R | N | Y | V | L | Y | Y |
| MF467739/Z9/African wild dog /2016/SA | - | - | - | - | - | - | - |
| MF467740/Z2/African wild dog /2016/SA | - | - | - | - | - | - | - |
| MF467741/Z13/African wild dog /2016/SA | - | - | - | - | S | - | - |
| MF467742/Z1/African wild dog /2016/SA | I | - | - | - | - | - | - |
| MF467743/Z11/African wild dog /2016/SA | - | - | - | - | S | - | - |
| KY971528/WT01/African wild dog /2016/SA | - | - | - | - | - | - | - |
| Non-canid | |||||||
| KY971532/WT02/SpottedHyena/2016/SA | I | N | H | V | L | Y | Y |
| MF467744/Z4/BrownHyena/2016/SA | - | - | - | - | - | - | - |
| MF467745/Z6/Lion/2015/SA | - | - | - | - | - | - | - |
| MF467746/Z7/Lion/2015/SA | - | - | - | - | - | - | - |
a South African CDV strains isolated by Woma et al. (2010) and deposited in GenBank