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. 2018 Mar 22;12(8):1867–1878. doi: 10.1038/s41396-018-0100-6

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© The Author(s) 2018

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 1 — Phylogenetic relationship of M. oryzae isolates. a Phylogenomic tree of M. oryzae isolates based on whole-genome SNP data. b STRUCTURE analysis of M. oryzae isolates. Each color in the plots represents the cluster membership coefficients. The presence of several colors in the same strain suggests admixture. c Principal component analysis (PCA) of M. oryzae isolates. d Origin of samples in this study. Red, blue, and green dots represent isolates of clade 1, clade 2 and clade 3. Some dots represent more than one isolate with same collection site. Suriname, French Guiana (left), and Ghana (right) are presented separately in two windows, for more information see Table S1