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. 2018 Apr 18;12(8):1940–1951. doi: 10.1038/s41396-018-0112-2

Fig. 1.

Fig. 1

Schematic diagram of the 3D pairwise cross-correlation analysis. The diagram is shown in two dimensions, but the actual analysis is conducted in three dimensions. PCC at a certain distance is calculated as the amount of pixels that are of a different color than the focal pixel, divided by the total amount of pixels at that distance (gray zones); this proportion is then normalized to the overall image fill of the two colors, such that random positioning will give a PCC equal to one as in daime [21]. In practice, results are aggregated across many randomly chosen focal pixels, and pixels are aggregated in distance bins