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. 2018 Jul 12;9:1545. doi: 10.3389/fmicb.2018.01545

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Copyright © 2018 Vergnaud, Hauck, Christiany, Daoud, Pourcel, Jacques, Cloeckaert and Zygmunt.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Superposition of whole genome phylogeny and MLVA11 genotypes of phylogeny deduced from whole genome SNP analysis of 355 sequence reads archives and complete genomes compatible with robust in silico MLVA genotypes reconstruction. Three hundred and fifty-five whole genome sequence datasets fulfilled the required criteria for a robust in silico reconstruction of MLVA genotypes, i.e., sufficiently long reads. The datasets were also used for a whole genome SNP analysis as well as for in silico MLST21 genotypes assignment. The color code and associated numbers indicate MLVA11 genotypes. B. abortus B, C1, and C2 MLST clades assignments are indicated. The numbers on branches are the number of SNPs. The length of branches is the square root of the SNP number.