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Rooted maximum likelihood phylogeny constructed with Gubbins based on SNP alignment of 49 Danish E. coli ST410 genomes. For each isolate, the following metadata are included: year of isolation, associated third-generation cephalosporin resistance (3GC resistance), and presence of IncFIA, IncFIB, IncFII, and IncX3 replicons. Possible clones and outbreaks are colored as per the key.
