Table 1.
Summary of the insect-specific flaviviruses detected from different mosquito pools, captured in Shanghai, during June to October in 2016
| Strain | Virus | Host | Collection date | Geographic location | Survey site type | GenBank ID | |
|---|---|---|---|---|---|---|---|
| NS5 | E | ||||||
| SB5_16–6-S-B-2-JG-3 | AeFV | Aedes albopictus | 14-Jun-2016 | Songjiang District | Office workspace | MG602480 | |
| SC6_16–6-S-B-4-JM-4 | AeFV | Ae. albopictus | 16-Jun-2016 | Songjiang District | Suburban residential area | MG602481 | |
| SA1_16–6-S-B-1-JM-1 | AeFV | Ae. albopictus | 14-Jun-2016 | Songjiang District | Suburban residential area | MG602482 | |
| SC3_16–6-S-B-4-JM-1 | AeFV | Ae. albopictus | 16-Jun-2016 | Songjiang District | Suburban residential area | MG602483 | |
| SA7_16–6-S-B-1-XX-3 | AeFV | Ae. albopictus | 14-Jun-2016 | Songjiang District | School | MG602484 | |
| SB4_16–6-S-B-2-JG-2 | AeFV | Ae. albopictus | 14-Jun-2016 | Songjiang District | Office workspace | MG602485 | |
| SB3_16–6-S-B-2-JG-1 | AeFV | Ae. albopictus | 14-Jun-2016 | Songjiang District | Office workspace | MG602486 | |
| SA3_16–6-S-B-1-JM-3 | AeFV | Ae. albopictus | 14-Jun-2016 | Songjiang District | Suburban residential area | MG602487 | |
| SC7_16–6-S-B-4-GY-1 | AeFV | Ae. albopictus | 16-Jun-2016 | Songjiang District | Public garden | MG602488 | |
| HL7_9-H-B-3-JM-3 | AeFV | Ae. albopictus | 22-Sep-2016 | Huangpu District | Suburban residential area | MG602503 | |
| QH8_8-Q-B-1-JM-1 | AeFV | Ae. albopictus | 8-Aug-2016 | Qingpu District | Suburban residential area | MG602504 | |
| CG8_16–7-C-Cxp-R-6-1 | CxFV | Culex pipiens | 6-Jul-2016 | Chongming District | Suburban residential area | MG602489 | |
| PJ7_16–10-P-Cxp-C-4-5 | CxFV | Cx. pipiens | 11-Oct-2016 | Pudong New Area | Livestock farm | MG602490 | |
| PJ4_16–10-P-Cxp-C-2-15 | CxFV | Cx. pipiens | 24-Oct-2016 | Pudong New Area | Suburban residential area | MG602491 | MG673529 |
| PK2_16–10-P-Cxp-C-4-2 | CxFV | Cx. pipiens | 2-Oct-2016 | Pudong New Area | Livestock farm | MG602492 | MG673530 |
| HK8_16–10-H-Cxp-C-1-3 | CxFV | Cx. pipiens | 12-Oct-2016 | Huangpu District | Urban residential area | MG602493 | |
| PG7_16–8 L-P-Cxp-C-2-21 | CxFV | Cx. pipiens | 22-Aug-2016 | Pudong New Area | Suburban residential area | MG602494 | MG673527 |
| PF1_16–7 M-P-Cxp-C-2-27 | CxFV | Cx. pipiens | 12-Jul-2016 | Pudong New Area | Suburban residential area | MG602495 | MG673526 |
| HK7_16–10-H-Cxp-C-1-1 | CxFV | Cx. pipiens | 2-Oct-2016 | Huangpu District | Urban residential area | MG602496 | |
| PJ3_10-P-Cxp-C-2-8 | CxFV | Cx. pipiens | 12-Oct-2016 | Pudong New Area | Suburban residential area | MG602497 | MG673528 |
| CB8_16–8-C-Cxt-C-3-1 | QBV | Cx. tritaeniorhynchus | 12-Aug-2016 | Chongming District | Rural residential area | MG602498 | |
| CC2_16–8-C-Cxt-C-5-5 | QBV | Cx. tritaeniorhynchus | 12-Aug-2016 | Chongming District | Livestock farm | MG602499 | |
| CC1_16–8-C-Cxt-C-5-3 | QBV | Cx. tritaeniorhynchus | 12-Aug-2016 | Chongming District | Livestock farm | MG602500 | |
| CD8_16–9-C-Cxt-R-2-1 | QBV | Cx. tritaeniorhynchus | 3-Sep-2016 | Chongming District | Rural residential area | MG602501 | |
| CI5_16–7-C-Cxt-R-4-4 | QBV | Cx. tritaeniorhynchus | 25-Jul-2016 | Chongming District | Livestock farm | MG602502 | |
| ZB3_16–7-CZ-Cxt-L-N-B3 | QBV | Cx. tritaeniorhynchus | 20-Jul-2016 | Chongming District | Conservation area | MG673531 | |
| ZG2_16–8-CZ-Cxt-L-G-G2 | QBV | Cx. tritaeniorhynchus | 26-Aug-2016 | Chongming District | Conservation area | MG673532 | |
| ZG5_16–8-CZ-Cxt-L-G-G5 | QBV | Cx. tritaeniorhynchus | 26-Aug-2016 | Chongming District | Conservation area | MG673533 | |
| ZI7_16–8-CZ-Cxt-L-R-I7 | QBV | Cx. tritaeniorhynchus | 26-Aug-2016 | Chongming District | Conservation area | MG673534 | |
| ZG4_16–8-CZ-Cxt-L-G-G4 | QBV | Cx. tritaeniorhynchus | 26-Aug-2016 | Chongming District | Conservation area | MG673535 | |
AEFV Aedes flavivirus, CxFV Culex flavivirus, QBV Quang Binh virus, NS5 Non-structural 5 gene, E Envelope gene