Table 3.
Summary of the results of priming efficiency (P.E.) values for each primer pair on the FMDV sequences (P.E. for the primer against a linked sequence/maximal theoretical P.E for a perfect match); low P.E. value (170 < P.E. < 210) or false priming (P.E. < 170) were denoted in bold and cursive letters (the original table showing the results obtained from the evaluation of the all sequences can be find in Table S2).
| GenBank access number| Strain or isolate | Primer pair | |||
|---|---|---|---|---|
| FP/RP-TgR1 | FP/RP-TgR2 | FP/RP-TgR3 | FP/RP-TgR4 | |
| AY593829.1| FMDV O isolate o6pirbright iso58 | (464/487)/(516/516) | (458/458)/(469/469) | (474/474)/(482/482) | (153/454)/(587/587) |
| AY593788.1| FMDV A isolate abrazil iso67 | (385/479)/(440/440) | (458/458)/(181/469) | (474/474)/(482/482) | (454/454)/(587/587) |
| AY593787.1| FMDV A isolate abage iso63 | (385/479)/(457/457) | (458/458)/(181/469) | (474/474)/(482/482) | (454/454)/(587/587) |
| AY593776.1| FMDV A isolate a3mecklenburg iso81 | (496/496)/(516/516) | (458/458)/(392/469) | (474/474)/(482/482) | (146/454)/(587/587) |
| AY593766.1| FMDV A isolate a23kenya iso8 | (447/487)/(466/466) | (458/458)/(415/469) | (474/474)/(482/482) | (176/454)/(587/587) |
| AY593759.1| FMDV A isolate a1bayern iso41 | (487/487)/(516/516) | (458/458)/(331/469) | (474/474)/(482/482) | (153/454)/(587/587) |
| AY593843.1| FMDV SAT 1 isolate sat16swa iso16 | (363/492)/(457/457) | (458/458)/(200/469) | (474/474)/(410/494) | (454/454)/(587/587) |
| AY593839.1| FMDV SAT 1 isolate sat120 iso11 | (363/492)/(416/416) | (178/458)/(469/469) | (326/474)/(494/494) | (454/454)/(371/587) |
| DQ404164.1| FMDV O strain UKG/11676/2001 | (487/487)/(516/516) | (458/458)/(469/469) | (474/474)/(482/482) | (153/454)/(587/587) |
| HQ832576.1| FMDV A isolate IND 21/1990 | (487/487)/(445/516) | (458/458)/(469/469) | (474/474)/(482/482) | (176/454)/(587/587) |
| KC412634.1| FMDV Asia 1 isolate Asia1/HN/2006 | (487/487)/(516/516) | (178/458)/(469/469) | (326/474)/(482/482) | (454/454)/(587/587) |
| JX040486.1| FMDV O isolate BUL/11/2011 | (362/487)/(390/444) | (458/458)/(469/469) | (474/474)/(482/482) | (175/454)/(587/587) |
| EF614458.1| FMDV Asia 1 strain Asia1/MOG/05 | (487/487)/(516/516) | (178/458)/(469/469) | (326/474)/(482/482) | (454/454)/(587/587) |
| HQ631363.1| FMDV Asia 1 isolate Asia1/1/YZ/CHA/06 | (487/487)/(516/516) | (178/458)/(469/469) | (326/474)/(482/482) | (454/454)/(587/587) |
| FJ906802.1| FMDV Asia 1 strain Asia1/WHN/CHA/06 | (499/499)/(516/516) | (178/458)/(469/469) | (326/474)/(482/482) | (454/454)/(587/587) |
| GU931682.1| FMDV Asia 1 isolate Asia1/YS/CHA/05 | (487/487)/(516/516) | (178/458)/(469/469) | (326/474)/(482/482) | (454/454)/(587/587) |
| DQ989323.1| FMDV Asia 1 isolate IND 9703 | (487/487)/(466/466) | (458/458)/(469/469) | (474/474)/(482/482) | (153/454)/(587/587) |
| EF149009.1| FMDV Asia 1 strain Asia 1/Jiangsu/China/2005 | (499/499)/(516/516) | (141/458)/(469/469) | (279/474)/(482/482) | (454/454)/(587/587) |
| KC462884.1| FMDV Asia 1 isolate Asial/HN/2006 | (487/487)/(516/516) | (178/458)/(469/469) | (326/474)/(482/482) | (454/454)/(587/587) |