Table II. LincRNAs are regulated by drought in both vegetative and reproductive stages.
Differential expression analysis categories supported by pairwise comparison using contrasts (inflorescence drought versus inflorescence control and inflorescence versus vegetative) are shown. Also shown are lincRNAs with higher expression in reproductive than vegetative tissues (italics) and a larger set of 208 and 112 lincRNAs (underlined) that respond to drought specifically in reproductive tissues by an increase and decrease in expression, respectively. In total, there are 447 lincRNAs (boldface) that respond to drought.
| Drought versus Control | Inflorescence versus Vegetative | Total | ||||
|---|---|---|---|---|---|---|
| Inflorescence | Vegetative | Down | Up | Not Differentially Expressed | ||
| Down | Down | 4 | 3 | 3 | 10 | 112 |
| Down | Not differentially expressed | 9 | 21 | 66 | 96 | |
| Down | Up | 2 | 1 | 3 | 6 | |
| Not differentially expressed | Down | 27 | 8 | 34 | 69 | 1,983 |
| Not differentially expressed | Not differentially expressed | 192 | 90 | 1,574 | 1,856 | |
| Not differentially expressed | Up | 22 | 5 | 31 | 58 | |
| Up | Down | 3 | 1 | 1 | 5 | 208 |
| Up | Not differentially expressed | 10 | 28 | 147 | 185 | |
| Up | Up | 3 | 3 | 12 | 18 | |
| Total | 272 | 160 | 1,871 | 2,303 | ||