Table 5.1.

The transcription factors (TFs) identified in ChIP-seq analysis

Associated TFsa	Targets	Cell lines	References
EBNA1	Human genome,	Raji	[4]
	EBV latent promoter
EBNA2, RBPJG, CTCF, EBF, RELA, H3K9ac, H3K4me1, Pol II, P300	Human genome	GM12878	[51]
EBNA2, EBF1, RBPJk	Human genome,	LCL,	[52]
	EBV latent promoter	Mutu III
EBNA2, H3K27Ac	Human genome	GM12878,	[53]
		Mutu III
EBNA-LP, EBNA2	Human genome	GM12878	[54]
EBNA3C, Sin3A, REST, EBNA2, RBPJG, IRF4, BATF, SPI1, RUNX3, p300, Pol II, H3K4me1, H3K4me3, H3K9ac	Human genome	GM12878	[55]
EBNA2, RBPJG, H3K27ac, H3K4me1, BRD4, P300, Pol II, BATF, EBF1, PAX5, SPI1, Sp1, NFAT, STAT5, ETS1, IRF4, CTCF, RAD21, SMC3, YY1; EBNA3A, EBNA3C, EBNA-LP, RelA, RelB, cRel, p50, p52	Human genome	GM12878	[60]
Notch1, RBPJG, ZNF143	Human genome	GM12878	[109]
EBNA3A, EBNA3C, EBNA2, RBPJG, BATF, IRF4, SPI1, RUNX3, NF-GB, MEF2A, PAX5, POU2F2, MAX, MYC, POL2, SIN3A, H3K27ac	Human genome	GM12878	[110]
CHD2, CFOS, BRCA, EGR1, PBX3, BCL3, GCN5, p300, TBP, TAF1, CTCF, Pol II, TCF12, EBF1, SP1, PU.1, PAX5, BATF, JUND, SMC3, RAD21, H3K27ac	Human genome,	GM12878	[111]
	EBV latent promoter
CTCF, RAD21, RPB1	EBV genome	Raji	[112]
Cohesin, RNA Polymerase II
EBNA3A, EBNA3B, EBNA3C	Human genome	LCL	[113]

^aEBV latent antigens are underlined