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. 2018 Jul 19;13(7):e0201068. doi: 10.1371/journal.pone.0201068

Fig 2. Alignment of different TP0548 allelic variants identified in this study.

Fig 2

Only positions containing nucleotide variants are shown. Only allelic variants identified in this study are shown; for a complete set of allelic variants see S1 Appendix. Coordinates shown in white on the dark background correspond to regions determined using ECDCT (Marra et al. 2010). All new allelic variants identified in this study included sequence changes outside the region characterized by ECDCT. A. Nucleotide differences between reference strain TPA SS14 and TPA Nichols in the region characterized using MLST (at coordinates 16–1080 of TPANIC_0548; CP004010.2). Coordinates shown above correspond to TPASS_0548 (TPA SS14; CP004011.1) and coordinates shown below correspond to TPANIC_0548 (TPA Nichols; CP004010.2). B. Nucleotide differences in SS14-like allelic variants. Coordinates correspond to TPASS_0548 (TPA SS14; CP004011.1). Allelic variants, which were not described previously, are shown in bold italics. The translation to ECDCT subtypes is shown in the last column. C. Nucleotide differences in Nichols-like allelic variants. Coordinates correspond to TPANIC_0548 (TPA Nichols; CP004010.2). Allelic variants, which were not described previously are shown in bold italics. The translation to ECDCT subtypes is shown in the last column.