Table 2. MLST allelic profiles of typed samples.
| Allelic profile1 | Typing | TP_0136 allelic variant2 | TP_0548 allelic variant2 | TP_0705allelic variant2 | 23S rDNA3 | Genetic group4 | Frequency5 |
|---|---|---|---|---|---|---|---|
| 1.1.1 | Complete | 1 | 1 | 1 | S (6)/R8 (10) | SS14-like | 16 |
| 1.1.9 | Complete | 1 | 1 | 9 | S | SS14-like | 1 |
| 1.1.11 | Complete | 1 | 1 | 11 | R8 | SS14-like | 1 |
| 1.1.13 | Complete | 1 | 1 | 13 | R8 | SS14-like | 1 |
| 1.17.9 | Complete | 1 | 17 | 9 | R8 | SS14-like | 2 |
| 2.1.2 | Complete | 2 | 1 | 2 | S | SS14-like | 1 |
| 1.3.1 | Complete | 1 | 3 | 1 | S (1)/R8 (68)/UN (1) | SS14-like | 70 |
| 1.18.1 | Complete | 1 | 18 | 1 | R8 | SS14-like | 1 |
| 1.19.1 | Complete | 1 | 19 | 1 | R8 | SS14-like | 1 |
| 1.21.1 | Complete | 1 | 21 | 1 | R8 | SS14-like | 1 |
| 1.23.1 | Complete | 1 | 23 | 1 | R8 | SS14-like | 1 |
| 14.3.1 | Complete | 14 | 3 | 1 | R8 | SS14-like | 1 |
| 1.1.8 | Complete | 1 | 1 | 8 | S (1)/R8 (4) | SS14-like | 5 |
| 1.11.8 | Complete | 1 | 11 | 8 | R8 | SS14-like | 2 |
| 1.22.12 | Complete | 1 | 22 | 12 | S | SS14-like | 1 |
| 9.7.3 | Complete | 9 | 7 | 3 | S (1)/R8 (4) | Nichols-like | 5 |
| 9.20.3 | Complete | 9 | 20 | 3 | S | Nichols-like | 1 |
| 3.2.3 | Complete | 3 | 2 | 3 | R8 | Nichols-like | 1 |
| 1.X.1 | Partial | 1 | NA6 | 1 | S (1)/R8 (1) | SS14-like | 2 |
| 1.3.X | Partial | 1 | 3 | NA6 | R8 | SS14-like | 1 |
| 1.X.9 | Partial | 1 | NA6 | 9 | R8 | SS14-like | 1 |
| X.17.9 | Partial | NA6 | 17 | 9 | R8 | SS14-like | 1 |
| X.X.3 | Partial | NA6 | NA6 | 3 | S | unknown | 1 |
1Allelic profiles are based on a three-number code: the first number corresponds to the allelic variant of the TP0136 locus, the second corresponds to the allelic variant of the TP0548 locus and the third corresponds to the allelic variant of the TP0705 locus [21].
3S –no mutation in 23S rDNA (sensitive), R8 –A2058G mutation in 23S rDNA (resistance), UN–unknown. In cases where sensitive and resistant cases were found for one profile the frequency is given in parenthesis. Sequences of both copies of rDNA locus were determined.
4According to Nechvátal and colleagues [33].
5Frequency refers to the number of samples in which the corresponding allelic profile was found.
6NA, not available.