Table 1. Comparison of two centrifugation protocols to produce platelet-poor plasma.
Centrifugation | n | Normalized to cel-miR-39 |
Normalized to miR-16 |
Normalized to mean of cel-miR-39 and miR-16 |
|||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Mean | CV (%) | P-value | Mean | CV (%) | P-value | Mean | CV (%) | P-value | |||
miR-92a | Single | 15 | 9.9 | 19.5 | 0.35 | 0.095 | 11.3 | 0.83 | 0.97 | 13.1 | 0.52 |
Dual | 15 | 9.2 | 21.1 | 0.096 | 9.5 | 0.94 | 13.3 | ||||
miR-126 | Single | 15 | 0.28 | 10.9 | 0.26 | 0.0027 | 14.0 | 0.01 | 0.027 | 9.2 | 0.02 |
Dual | 15 | 0.30 | 17.3 | 0.0031 | 14.2 | 0.030 | 12.5 | ||||
miR-16 | Single | 15 | 105 | 19.0 | 0.25 | ||||||
Dual | 15 | 96 | 19.4 |
30 tubes of EDTA-anticoagulated whole blood were drawn from a peripheral vein of a healthy volunteer. From each tube platelet-poor plasma (PPP) was prepared by either dual centrifugation or a prolonged single step centrifugation. MicroRNA-levels in each PPP were measured using RT-qPCR (single assays) and normalized to either cel-miR-39, miR-16 or the mean of cel-miR-39 and miR-16. For each centrifugation protocol and with all normalization strategies, the mean relative microRNA level and the coefficient of variation (CV) are provided. P-values (t-test) are shown for the comparison of the mean of the two centrifugation protocols.