Table 2. Precision and repeatability of qPCR and ddPCR.
Normalized to cel-miR-39 |
Normalized to miR-16 |
Normalized to mean of cel-miR-39 and miR-16 |
||||||
---|---|---|---|---|---|---|---|---|
Mean | CV (%) | Mean | CV (%) | Mean | CV (%) | |||
miR-92a | qPCR | Precision | 16.9 | 31.4 | 0.16 | 22.2 | 1.62 | 26.5 |
Repeatability | 6.8 | 6.3 | 6.0 | |||||
ddPCR | Precision | 5.8 | 26.7 | 0.22 | 21.6 | 1.13 | 23.7 | |
Repeatability | 13.2 | 4.4 | 7.8 | |||||
miR-126 | qPCR | Precision | 0.29 | 15.6 | 0.0028 | 10.5 | 0.028 | 11.1 |
Repeatability | 5.1 | 4.8 | 4.2 | |||||
ddPCR | Precision | 0.78 | 12.4 | 0.029 | 5.7 | 0.15 | 7.0 | |
Repeatability | 20.1 | 13.4 | 15.9 | |||||
miR-16 | qPCR | Precision | 107 | 13.2 | ||||
Repeatability | 5.2 | |||||||
ddPCR | Precision | 26.5 | 12.4 | |||||
Repeatability | 11.3 |
A microRNA pool was reverse transcribed in doublets in 15 independent cDNA syntheses on different days. The transcribed cDNAs were assessed in doublets in 15 independent qPCR and ddPCR. The 15 duplicate measurements were used to calculate the precision (inter-assay variation) and repeatability (intra-assay variation) of the two methods for microRNA quantification. The table shows for each method the mean of all 30 measurements and the coefficient of variation (CV).