Table 1.
Summary of total sRNAs sequencing from six libraries.
Category | CK1 | T1 | T2 | T3 | T4 | CK2 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Number | Percent (%) | Number | Percent (%) | Number | Percent (%) | Number | Percent (%) | Number | Percent (%) | Number | Percent (%) | |
total_reads | 21750527 | 21282022 | 19122236 | 26754613 | 24583971 | 19450616 | ||||||
high_quality | 21199911 | 100 | 20547608 | 100 | 18447590 | 100 | 26043435 | 100 | 24024124 | 100 | 18984247 | 100 |
3′ adapter_null | 480033 | 2.26 | 187212 | 0.91 | 168122 | 0.91 | 345399 | 1.33 | 212689 | 0.89 | 437851 | 2.31 |
insert_null | 23640 | 0.11 | 6392 | 0.03 | 12199 | 0.07 | 20561 | 0.08 | 23047 | 0.10 | 38485 | 0.20 |
5′ adapter_contaminants | 17532 | 0.08 | 15641 | 0.08 | 18995 | 0.10 | 51034 | 0.20 | 22246 | 0.09 | 44281 | 0.23 |
smaller_than_18nt | 671781 | 3.17 | 863116 | 4.20 | 1711660 | 9.28 | 2173575 | 8.35 | 1269318 | 5.28 | 1061825 | 5.59 |
polyA | 1733 | 0.01 | 995 | 0.00 | 825 | 0.00 | 1710 | 0.01 | 1321 | 0.01 | 468 | 0.00 |
expressed less than 5 | 7077285 | 33.38 | 7015148 | 34.14 | 4516006 | 24.48 | 4056791 | 15.58 | 3753104 | 15.62 | 2291039 | 12.07 |
clean_reads | 12927907 | 60.98 | 12459104 | 60.64 | 12019783 | 65.16 | 19394365 | 74.47 | 18742399 | 78.01 | 15110298 | 79.59 |
Note: T1, T2, T3, and T4 indicated that after inoculation, red ripening fruits were chose and took at 48 h, 72 h, 96 h and 120 h, respectively. CK1 indicated that red ripening fruits were took from strawberry plants treated with sterile water. CK2 indicates B. cinerea. The same applies to the following figures and tables.