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. 2018 Jul 19;8:10915. doi: 10.1038/s41598-018-29261-5

Table 2.

Examples of mobile DNA elements in Psa3 (ICMP18708) and Psa1 (ICMP9853).

name size (bp) copy no. Psa3 copy no. Psa1 Element type or IS family closest example in GenBank (DNA match)
Tn6212 16316 1 0 XerC Ps pv. syringae, (99%), Ps pv. tomato (99%)
ISPsy35 1701 3 1 IS110 Ps pv. theae (99%), Ps pv. actinidifoliorum (99%), Ps pv. viburni (99%)
ISPpu10-like nd 0 1 IS110
ISPsy36 1658 21 40 IS1182 P. avellanae, Ps pv. theae, Psa5 (all 100%)
ISPsy40 2644 14 7 IS21 Ps pv. actinidifoliorum (99%)
ISPsy41 2575 3 26 IS21 P. mandelii (91%), P. veronii (91%)
ISPsy20 2572 0 1 IS21
ISPsy17 1374 11 0 IS256 Ps pv. maculicola (96% id)
ISPsy31 1667 54 88 IS3 P. avellanae, Ps pv. theae (100%)
ISPsy28 1292 19 11 IS3 P. avellanae, Ps pv. theae, P. amygdali pv. morsprunorum (99%)
ISPsy37 1215 1 2 IS3 Psa5 (98%), P. amygdali pv. morsprunorum (96%)
ISPsy24 nd 1 0 IS3
ISPsy38 1100 0 31 IS30 P. avellanae (99%), P. coronafaciens (99%)
ISPsy33 1429 27 20 IS4_ssgrIS4 P. avellanae, Ps pv. theae, Ps pv. actinidifoliorum (all 99%)
ISPsy19-like nd 1 1 IS5
ISPa67-like nd 1 1 IS5
ISPsy2 1200 1 1 IS5_ssgr_IS5 Ps pv. eriobotryae, P. savastanoi pv. phaseolicola (99%)
ISPsy34 2041 11 24 IS66 Ps pv. avii, Ps pv. actinidifoliorum (96%)
ISPsy43 (Tn6211) 4875 1 0 IS66 P. amygdali pv. morsprunorum (99%), many P. syringae pathovars (99%)
ISPsy32 1170 60 48 IS630 Psa2 (99%), P. broussonetiae (99%), Ps pv. actinidifoliorum (98%)
ISPsy25 nd 1 1 IS630
ISPsy32-like nd 11 11 IS630
ISPsy200-like-A 459 1 1 IS200-like Ps pv. theae (99%), P. amygdali pv. morsprunorum (99%)
ISPsy200-like-B 459 1 1 IS200-like Ps pv. theae, P. avellanae (99%)
TnE622 3734 1 1 Tn3 P. savastonoi pv. glycinea B076 (99%)
ISPsy39 3939 0 3 Tn3 P. amygdali pv. morsprunorum (99%)
ISPsy42 5667 3 0 Tn3 Xanthomonas arboricola pv. pruni plasmid pXap41 (99%)
MITEPsy3 102 78 0 MITE P. amygdali pv. lachrymans (87%)
PSA_retron1 2566 1 0 retron
PSA_retron2 2700 1 0 retron
PSA_retron3 2102 0 1 retron
Psa_I1 1867 15 0 gp II intron Psa5 (100%), P. avellanae (99%),
Psa_I2 1873 13 19 gp II intron Ps pv. theae (99%), P. savastanoi pv. phaseolicola (99%),
Psa_I3 1873 28 10 gp II intron P. avellanae, Ps pv. theae, Ps pv. actinidifoliorum, Psa5, Ps pv. tomato (all 99%)