Table 3.

Expression value of known miRNAs in Thrips tabaci. The first column represents miRNA family; the second column represents the number of reads annotated on the particular miRNA family; the third column represents length of the mature miRNA sequences; the fourth column represents the name of the miRNAs in T. tabaci; the fifth column represents the miRNA sequence; the sixth column represents homologous species of organism where it has the highest similarity

miRNA family	Expression valuesa (Reads)	Length (nt)	Name of the miRNA	Sequence (5′–3′)	Resource
mir‐281	468	19	tta‐miR‐281a	AAGAGAGCUAUCCGUCGAC	Aedes aegypti
mir‐281	17583	22	tta‐miR‐281b	AAGAGAGCUAUCCGUCGACAGU	Bombyx mori
mir‐281	4	22	tta‐miR‐281c	AAGAGAGCUGUCCGUCGACAGU	Drosophila ananassae
mir‐281	5	21	tta‐miR‐281d	AAGGGAGCAUCUGUCGACAGU	Lottia gigantea
mir‐281	3	22	tta‐miR‐281e	UGUCAUGGAGUUGCUCUCUUUU	Branchiostoma belcheri
mir‐276	507	21	tta‐miR‐276a	UAGGAACUUCAUACCGUGCUC	Aedes aegypti
mir‐276	25904	22	tta‐miR‐276b	UAGGAACUUCAUACCGUGCUCU	Locusta migratoria
mir‐276	7	22	tta‐miR‐276c	UAGGAACUUAAUACCGUGCUCU	Drosophila ananassae
mir‐306	173	21	tta‐miR‐306a	UCAGGUACUAGGUGACUCUGA	Bombyx mori
mir‐306	3507	22	tta‐miR‐306b	UCAGGUACUGAGUGACUCUGAG	Apis mellifera
mir‐306	1976	22	tta‐miR‐306c	UCAGGUACUGAGUGACUCUCAG	Aedes aegypti
bantam	61	21	tta‐miR‐bantam‐a	UGAGAUCAUUGUGAAAGCUAU	Brugia malayi
bantam	33	22	tta‐miR‐bantam‐b	UGAGAUCAUUUUGAAAGCUGAU	Aedes aegypti
bantam	1889	23	tta‐miR‐bantam‐c	UGAGAUCAUUGUGAAAGCUGAUU	Apis mellifera
bantam	5	23	tta‐miR‐bantam‐d	UGAGAUCAUUGUGAAAGCUAAUU	Acyrthosiphon pisum
mir‐92	5	20	tta‐miR‐92a	UAUUGCACUCGUCCCGGCCU	Brugia malayi
mir‐92	8	22	tta‐miR‐92b	UAUUGCACCAGUCCCGGCCUAU	Bombyx mori
mir‐92	6	22	tta‐miR‐92c	UAUUGCACCUGUCCCGGCCGAU	Ciona savignyi
mir‐92	76	22	tta‐miR‐92d	UAUUGCACUCGUCCCGGCCUUG	Oikopleura dioica
mir‐92	4	23	tta‐miR‐92e	UAUUGCACCAGUCCCGGCCUGAC	Tribolium castaneum
mir‐92	1861	22	tta‐miR‐92f	UAUUGCACUCGUCCCGGCCUGU	Saccoglossus kowalevskii
mir‐92	629	22	tta‐miR‐92 g	UAUUGCACUCGUCCCGGCCUGC	Lytechinus variegatus
mir‐92	46	22	tta‐miR‐92 h	AAUUGCACCCGUCCCGGCCUGA	Apis mellifera
mir‐750	4	22	tta‐miR‐750a	CAGAUCUAACUCUUCCAGCUCA	Lottia gigantea
mir‐750	1242	22	tta‐miR‐750b	CCAGAUCUAACUCUUCCAGCUC	Apis mellifera
mir‐750	107	23	tta‐miR‐750c	CCAGAUCUAACUCUUCCAGCUCA	Capitella teleta
mir‐10	433	21	tta‐miR‐10a	ACCCUGUAGAUCCGAAUUUGU	Acyrthosiphon pisum
mir‐10	6	21	tta‐miR‐10b	UACCCUGUAGAUCCGAAUUUG	Ovis aries
mir‐10	4	22	tta‐miR‐10c	UACCCUGUAGAACCGAAUUUGU	Anolis carolinensis
mir‐10	6	22	tta‐miR‐10d	ACCCUGUAGAUCCGAAUUUGUU	Aedes aegypti
mir‐10	9	22	tta‐miR‐10e	AACCCUGUAGACCCGAAUUUGA	Gyrodactylus salaris
mir‐10	52	22	tta‐miR‐10f	UACCCUGUAGAUCCGAAUUUGU	Lottia gigantea
mir‐10	3	23	tta‐miR‐10 g	UACCCUGUAGAACCGAAUUUGUG	Bos taurus
mir‐10	16	23	tta‐miR‐10 h	UACCCUGUAGAAUCGAAUUUGUG	Anolis carolinensis
mir‐10	3	23	tta‐miR‐10i	AACCCUGUAGAUCCGAGUUAGAU	Schmidtea mediterranea
mir‐100	5	21	tta‐miR‐100a	AACCCGUAGAUCCGAACUUGU	Capra hircus
mir‐100	20	22	tta‐miR‐100b	AACCCGUAGAUCCGAACUUGUG	Ateles geoffroyi
mir‐100	57	23	tta‐miR‐100c	AACCCGUAGAUCCGAACUUGUGU	Branchiostoma floridae
mir‐100	3	24	tta‐miR‐100d	AACCCGUAGAUCCGAACUUGUGUU	Ascaris suum
mir‐1000	11	18	tta‐miR‐1000a	AUAUUGUCCUGUCACAGC	Tribolium castaneum
mir‐1000	192	21	tta‐miR‐1000b	AUAUUGUCCUGUCACAGCAGU	Drosophila melanogaster
mir‐1000	183	22	tta‐miR‐1000c	AUAUUGUCCUGUCACAGCAGUA	Drosophila pseudoobscura
mir‐8	248	22	tta‐miR‐8a	UAAUACUGUCAGGUAAAGAUGU	Culex quinquefasciatus
mir‐8	15951	23	tta‐miR‐8b	UAAUACUGUCAGGUAAAGAUGUC	Capitella teleta
mir‐8	5	22	tta‐miR‐8c	CAUCUUACCGGGCAGCAUUAGA	Aedes aegypti
mir‐9	8	18	tta‐miR‐9a	UCUUUGGUAUCCUAGCUG	Bombyx mori
mir‐9	7	21	tta‐miR‐9b	UCUUUGGUGAUCUAGUUGUAU	Tribolium castaneum
mir‐9	6	21	tta‐miR‐9c	UCUUUGGUACUUUAGCUGUAG	Acyrthosiphon pisum
mir‐9	13	23	tta‐miR‐9d	UCUUUGGUUAUCUAGCUGUAUGA	Capitella teleta
mir‐9	4	24	tta‐miR‐9e	UCUUUGGUUUUCUAGCUGUAUGAU	Schmidtea mediterranea
mir‐2	21	23	tta‐miR‐2a	UAUCACAGCCAGCUUUGAUGAGC	Apis mellifera
mir‐2	27	23	tta‐miR‐2b	UAUCACAGCCAGCUUUGAUGAGU	Lottia gigantea
mir‐2	27	24	tta‐miR‐2c	UAUCACAGCCAGCUUUGAUGAGCU	Aedes aegypti
mir‐184	7145	21	tta‐miR‐184a	UGGACGGAGAACUGAUAAGGG	Anopheles gambiae
mir‐184	142	22	tta‐miR‐184b	UGGACGGAGAACUGAUAAGGGU	Anolis carolinensis
mir‐184	118	22	tta‐miR‐184c	UGGACGGAGAACUGAUAAGGGC	Ixodes scapularis
mir‐279	20	21	tta‐miR‐279a	UGACUAGAUCCACACUCAUCC	Acyrthosiphon pisum
mir‐279	58	22	tta‐miR‐279b	UGACUAGAUCCACACUCAUCCA	Lottia gigantea
mir‐279	14	22	tta‐miR‐279c	UGACUAGAUCCACACUCAUUAA	Anopheles gambiae
mir‐279	4	22	tta‐miR‐279d	UGACUAGAUCUACACUCAUUGA	Bombyx mori
mir‐279	105	22	tta‐miR‐279e	UGACUAGAGUCACACUCGUCCA	Apis mellifera
mir‐279	635	22	tta‐miR‐279f	UGACUAGAUCCAUACUCGUCUG	Bombyx mori
mir‐279	26	24	tta‐miR‐279 g	UGACUAGAUCGAAAUACUCGUCCC	Apis mellifera
mir‐279	103	25	tta‐miR‐279 h	UGACUAGAUCCAUACUCGUCUAUAG	Tribolium castaneum
mir‐2796	65	21	tta‐miR‐2796a	AGGCCGGCGGAAACUACUUGC	Nasonia vitripennis
mir‐2796	5	22	tta‐miR‐2796b	GUAGGCCGGCGGAAACUACUAG	Acyrthosiphon pisum
mir‐2796	168	23	tta‐miR‐2796c	GUAGGCCGGCGGAAACUACUUGC	Apis mellifera
mir‐14	26	21	tta‐miR‐14a	UCAGUCUUUUUCUCUCUCCUA	Anopheles gambiae
mir‐14	12427	22	tta‐miR‐14b	UCAGUCUUUUUCUCUCUCCUAU	Acyrthosiphon pisum
mir‐993	3	20	tta‐miR‐993a	UACCCUGUAGAUCCGGGCUU	Tribolium castaneum
mir‐993	110	23	tta‐miR‐993b	GAAGCUCGUCUCUACAGGUAUCU	Acyrthosiphon pisum
mir‐993	10	23	tta‐miR‐993c	UACCCUGUAGAUCCGGGCUUUUG	Manduca sexta
mir‐993	3	23	tta‐miR‐993d	UACCCUGUAGUUCCGGGCUUUUG	Drosophila melanogaster
mir‐1175	106	23	tta‐miR‐1175a	AAGUGGAGCAGUGGUCUCUUCAC	Tribolium castaneum
mir‐1175	17	22	tta‐miR‐1175b	AAGUGGAGUAGUGGUCUCAUCG	Aedes aegypti
mir‐1175	4	23	tta‐miR‐1175c	UGAGAUUCACUCCUCCAACUUAC	Apis mellifera
mir‐1175	56	24	tta‐miR‐1175d	UGAGAUUCAACUCCUCCAACUUAA	Bombyx mori
mir‐124	106	21	tta‐miR‐124a	UAAGGCACGCGGUGAAUGCCA	Schmidtea mediterranea
mir‐124	84	21	tta‐miR‐124b	UAAGGCACGCGGUGAAUGCUA	Anolis carolinensis
mir‐263	4	21	tta‐miR‐263a	AAUGGCACUGGAAGAAUUCAC	Bombyx mori
mir‐263	18	23	tta‐miR‐263b	AAUGGCACUGGAAGAAUUCACGG	Aedes aegypti
mir‐263	20	24	tta‐miR‐263c	AAUGGCACUGGAAGAAUUCACGGG	Drosophila melanogaster
mir‐2944	18	22	tta‐miR‐2944a	UAUCACAGCAGUAGUUACCUGA	Aedes aegypti
mir‐2944	13	23	tta‐miR‐2944b	UAUCACAGCAGUAGUUACCUGGU	Apis mellifera
mir‐13	399	22	tta‐miR‐13a	UAUCACAGCCACUUUGAUGAGC	Tribolium castaneum
mir‐13	17	23	tta‐miR‐13b	UAUCACAGCCAUUUUUGACGAGU	Bombyx mori
mir‐34	15	22	tta‐miR‐34a	UGGCAGUGUGGUUAGCUGGUUG	Aedes aegypti
mir‐34	5	23	tta‐miR‐34b	UGGCAGUGUGGUUAGCUGGUUGU	Ascaris suum
mir‐34	3	23	tta‐miR‐34c	UGGCAGUGUGGUUAGCUGGUAGU	Lottia gigantea
mir‐133	15	22	tta‐miR‐133a	UUGGUCCCCGUCAACCAGCUGU	Schmidtea mediterranea
mir‐133	14	22	tta‐miR‐133b	UUGGUCCCCUUCAACCAGCUGU	Drosophila persimilis
mir‐317	5	21	tta‐miR‐317a	UGAACACAGCUGGUGGUAUCU	Acyrthosiphon pisum
mir‐317	13	24	tta‐miR‐317b	UGAACACAGCUGGUGGUAUCUUCU	Lottia gigantea
mir‐317	13	25	tta‐miR‐317c	UGAACACAGCUGGUGGUAUCUCAGU	Apis mellifera
mir‐317	4	25	tta‐miR‐317d	UGAACACAGCUGGUGGUAUCUCUUU	Capitella teleta
mir‐12	13	21	tta‐miR‐12a	UGAGUAUUACAUCAGGUACUG	Tribolium castaneum
mir‐12	3	23	tta‐miR‐12b	UGAGUAUUACAUCAGGUACUGGU	Daphnia pulex
mir‐252	4	22	tta‐miR‐252a	CUAAGUACUAGUGCCGCAGGAG	Drosophila melanogaster
mir‐252	5	23	tta‐miR‐252b	CUAAGUACUAGUGCCGCAGGAGU	Saccoglossus kowalevskii
mir‐277	11	22	tta‐miR‐277a	UAAAUGCACUAUCUGGUACGAC	Aedes aegypti
mir‐277	5	23	tta‐miR‐277b	UAAAUGCACUAUCUGGUACGACA	Acyrthosiphon pisum
mir‐31	3	21	tta‐miR‐31a	AGGCAAGAUGUCGGCAUAGCU	Tribolium castaneum
mir‐31	7	22	tta‐miR‐31b	GGCAAGAUGUCGGCAUAGCUGA	Apis mellifera
mir‐3477	69	23	tta‐miR‐3477a	UAAUCUCAUGCGGUAACUGUGAG	Apis mellifera
mir‐3477	121	22	tta‐miR‐3477b	UAAUCUCAUGUGGUAACUGUGA	Apis mellifera
mir‐2779	5	20	tta‐miR‐2779	AUAUCCGGCUCGAAGGACCA	Bombyx mori
mir‐929	4	22	tta‐miR‐929	AAAUUGACUCUAGUAGGGAGUC	Drosophila melanogaster
mir‐71	172	22	tta‐miR‐71	UCUCACUACCUUGUCUUUCAUG	Tribolium castaneum
mir‐375	4	22	tta‐miR‐375	UUUGUUCGUUCGGCUCGAGUUA	Apis mellifera
mir‐190	3	24	tta‐miR‐190	AGAUAUGUUUGAUAUUCUUGGUUG	Acyrthosiphon pisum
mir‐7550	3	18	tta‐miR‐7550	AUCCGGCUCGAAGGACCA	Ictalurus punctatus
mir‐482	3	22	tta‐miR‐482	GGAAUGGGCUGAUUGGGAAGCA	Phaseolus vulgaris
mir‐2478	3	20	tta‐miR‐2478	GUAUCCCACUUCUGACACCA	Bos taurus
mir‐316	3	21	tta‐miR‐316	UGUCUUUUUCCGCUUUGCUGC	Heliconius melpomene
mir‐3049	98	23	tta‐miR‐3049	UCGGGAAGGUAGUUGCGGCGGAU	Apis mellifera
mir‐996	57	21	tta‐miR‐996	UGACUAGAUACAUACUCGUCU	Apis mellifera
mir‐275	40	23	tta‐miR‐275	UCAGGUACCUGAAGUAGCGCGCG	Anopheles gambiae
mir‐965	31	22	tta‐miR‐965	UAAGCGUAUAGCUUUUCCCCUU	Tribolium castaneum
mir‐67	25	24	tta‐miR‐67	UCACAACCUCCUUGAGUGAGUUGA	Ascaris suum
mir‐315	21	23	tta‐miR‐315	UUUUGAUUGUUGCUCAGAAAGCC	Acyrthosiphon pisum
mir‐305	14	23	tta‐miR‐305	UUUGUACUUCAUCAGGUGCUCUG	Tetranychus urticae
mir‐894	11	20	tta‐miR‐894	CGUUUCACGUCGGGUUCACC	Physcomitrella patens
mir‐3533	9	20	tta‐miR‐3533	AUGAAGUGUGACGUGGACAU	Bos taurus
mir‐307	9	20	tta‐miR‐307	UCACAACCUCCUUGAGUGAG	Daphnia pulex
mir‐2765	664	22	tta‐miR‐2765	UGGUAACUCCACCACCGUUGGC	Bombyx mori
mir‐210	22	21	tta‐miR‐210	CUUGUGCGUGUGACAGCGGCU	Drosophila melanogaster
mir‐1	650	22	tta‐miR‐1	UGGAAUGUAAAGAAGUAUGGAG	Drosophila melanogaster
mir‐87	18	21	tta‐miR‐87	GUGAGCAAAGUUUCAGGUGUG	Ixodes scapularis
let‐7	279	21	tta‐let‐7	TGAGGTAGTAGGTTGTATAGT	Drosophila melanogaster
mir‐3791	15	21	tta‐miR‐3791	UCACCGGGUAGGAUUCAUCCA	Apis mellifera
Plant‐specific miRNA
mir‐9774	6	22	–	CAAGATATTGGGTATTTCTGTC	Triticum aestivum

^aExpression value is equivalent to number of miRNA reads from the library.