Table 3.
miRNA family | Expression valuesa (Reads) | Length (nt) | Name of the miRNA | Sequence (5′–3′) | Resource |
---|---|---|---|---|---|
mir‐281 | 468 | 19 | tta‐miR‐281a | AAGAGAGCUAUCCGUCGAC | Aedes aegypti |
mir‐281 | 17583 | 22 | tta‐miR‐281b | AAGAGAGCUAUCCGUCGACAGU | Bombyx mori |
mir‐281 | 4 | 22 | tta‐miR‐281c | AAGAGAGCUGUCCGUCGACAGU | Drosophila ananassae |
mir‐281 | 5 | 21 | tta‐miR‐281d | AAGGGAGCAUCUGUCGACAGU | Lottia gigantea |
mir‐281 | 3 | 22 | tta‐miR‐281e | UGUCAUGGAGUUGCUCUCUUUU | Branchiostoma belcheri |
mir‐276 | 507 | 21 | tta‐miR‐276a | UAGGAACUUCAUACCGUGCUC | Aedes aegypti |
mir‐276 | 25904 | 22 | tta‐miR‐276b | UAGGAACUUCAUACCGUGCUCU | Locusta migratoria |
mir‐276 | 7 | 22 | tta‐miR‐276c | UAGGAACUUAAUACCGUGCUCU | Drosophila ananassae |
mir‐306 | 173 | 21 | tta‐miR‐306a | UCAGGUACUAGGUGACUCUGA | Bombyx mori |
mir‐306 | 3507 | 22 | tta‐miR‐306b | UCAGGUACUGAGUGACUCUGAG | Apis mellifera |
mir‐306 | 1976 | 22 | tta‐miR‐306c | UCAGGUACUGAGUGACUCUCAG | Aedes aegypti |
bantam | 61 | 21 | tta‐miR‐bantam‐a | UGAGAUCAUUGUGAAAGCUAU | Brugia malayi |
bantam | 33 | 22 | tta‐miR‐bantam‐b | UGAGAUCAUUUUGAAAGCUGAU | Aedes aegypti |
bantam | 1889 | 23 | tta‐miR‐bantam‐c | UGAGAUCAUUGUGAAAGCUGAUU | Apis mellifera |
bantam | 5 | 23 | tta‐miR‐bantam‐d | UGAGAUCAUUGUGAAAGCUAAUU | Acyrthosiphon pisum |
mir‐92 | 5 | 20 | tta‐miR‐92a | UAUUGCACUCGUCCCGGCCU | Brugia malayi |
mir‐92 | 8 | 22 | tta‐miR‐92b | UAUUGCACCAGUCCCGGCCUAU | Bombyx mori |
mir‐92 | 6 | 22 | tta‐miR‐92c | UAUUGCACCUGUCCCGGCCGAU | Ciona savignyi |
mir‐92 | 76 | 22 | tta‐miR‐92d | UAUUGCACUCGUCCCGGCCUUG | Oikopleura dioica |
mir‐92 | 4 | 23 | tta‐miR‐92e | UAUUGCACCAGUCCCGGCCUGAC | Tribolium castaneum |
mir‐92 | 1861 | 22 | tta‐miR‐92f | UAUUGCACUCGUCCCGGCCUGU | Saccoglossus kowalevskii |
mir‐92 | 629 | 22 | tta‐miR‐92 g | UAUUGCACUCGUCCCGGCCUGC | Lytechinus variegatus |
mir‐92 | 46 | 22 | tta‐miR‐92 h | AAUUGCACCCGUCCCGGCCUGA | Apis mellifera |
mir‐750 | 4 | 22 | tta‐miR‐750a | CAGAUCUAACUCUUCCAGCUCA | Lottia gigantea |
mir‐750 | 1242 | 22 | tta‐miR‐750b | CCAGAUCUAACUCUUCCAGCUC | Apis mellifera |
mir‐750 | 107 | 23 | tta‐miR‐750c | CCAGAUCUAACUCUUCCAGCUCA | Capitella teleta |
mir‐10 | 433 | 21 | tta‐miR‐10a | ACCCUGUAGAUCCGAAUUUGU | Acyrthosiphon pisum |
mir‐10 | 6 | 21 | tta‐miR‐10b | UACCCUGUAGAUCCGAAUUUG | Ovis aries |
mir‐10 | 4 | 22 | tta‐miR‐10c | UACCCUGUAGAACCGAAUUUGU | Anolis carolinensis |
mir‐10 | 6 | 22 | tta‐miR‐10d | ACCCUGUAGAUCCGAAUUUGUU | Aedes aegypti |
mir‐10 | 9 | 22 | tta‐miR‐10e | AACCCUGUAGACCCGAAUUUGA | Gyrodactylus salaris |
mir‐10 | 52 | 22 | tta‐miR‐10f | UACCCUGUAGAUCCGAAUUUGU | Lottia gigantea |
mir‐10 | 3 | 23 | tta‐miR‐10 g | UACCCUGUAGAACCGAAUUUGUG | Bos taurus |
mir‐10 | 16 | 23 | tta‐miR‐10 h | UACCCUGUAGAAUCGAAUUUGUG | Anolis carolinensis |
mir‐10 | 3 | 23 | tta‐miR‐10i | AACCCUGUAGAUCCGAGUUAGAU | Schmidtea mediterranea |
mir‐100 | 5 | 21 | tta‐miR‐100a | AACCCGUAGAUCCGAACUUGU | Capra hircus |
mir‐100 | 20 | 22 | tta‐miR‐100b | AACCCGUAGAUCCGAACUUGUG | Ateles geoffroyi |
mir‐100 | 57 | 23 | tta‐miR‐100c | AACCCGUAGAUCCGAACUUGUGU | Branchiostoma floridae |
mir‐100 | 3 | 24 | tta‐miR‐100d | AACCCGUAGAUCCGAACUUGUGUU | Ascaris suum |
mir‐1000 | 11 | 18 | tta‐miR‐1000a | AUAUUGUCCUGUCACAGC | Tribolium castaneum |
mir‐1000 | 192 | 21 | tta‐miR‐1000b | AUAUUGUCCUGUCACAGCAGU | Drosophila melanogaster |
mir‐1000 | 183 | 22 | tta‐miR‐1000c | AUAUUGUCCUGUCACAGCAGUA | Drosophila pseudoobscura |
mir‐8 | 248 | 22 | tta‐miR‐8a | UAAUACUGUCAGGUAAAGAUGU | Culex quinquefasciatus |
mir‐8 | 15951 | 23 | tta‐miR‐8b | UAAUACUGUCAGGUAAAGAUGUC | Capitella teleta |
mir‐8 | 5 | 22 | tta‐miR‐8c | CAUCUUACCGGGCAGCAUUAGA | Aedes aegypti |
mir‐9 | 8 | 18 | tta‐miR‐9a | UCUUUGGUAUCCUAGCUG | Bombyx mori |
mir‐9 | 7 | 21 | tta‐miR‐9b | UCUUUGGUGAUCUAGUUGUAU | Tribolium castaneum |
mir‐9 | 6 | 21 | tta‐miR‐9c | UCUUUGGUACUUUAGCUGUAG | Acyrthosiphon pisum |
mir‐9 | 13 | 23 | tta‐miR‐9d | UCUUUGGUUAUCUAGCUGUAUGA | Capitella teleta |
mir‐9 | 4 | 24 | tta‐miR‐9e | UCUUUGGUUUUCUAGCUGUAUGAU | Schmidtea mediterranea |
mir‐2 | 21 | 23 | tta‐miR‐2a | UAUCACAGCCAGCUUUGAUGAGC | Apis mellifera |
mir‐2 | 27 | 23 | tta‐miR‐2b | UAUCACAGCCAGCUUUGAUGAGU | Lottia gigantea |
mir‐2 | 27 | 24 | tta‐miR‐2c | UAUCACAGCCAGCUUUGAUGAGCU | Aedes aegypti |
mir‐184 | 7145 | 21 | tta‐miR‐184a | UGGACGGAGAACUGAUAAGGG | Anopheles gambiae |
mir‐184 | 142 | 22 | tta‐miR‐184b | UGGACGGAGAACUGAUAAGGGU | Anolis carolinensis |
mir‐184 | 118 | 22 | tta‐miR‐184c | UGGACGGAGAACUGAUAAGGGC | Ixodes scapularis |
mir‐279 | 20 | 21 | tta‐miR‐279a | UGACUAGAUCCACACUCAUCC | Acyrthosiphon pisum |
mir‐279 | 58 | 22 | tta‐miR‐279b | UGACUAGAUCCACACUCAUCCA | Lottia gigantea |
mir‐279 | 14 | 22 | tta‐miR‐279c | UGACUAGAUCCACACUCAUUAA | Anopheles gambiae |
mir‐279 | 4 | 22 | tta‐miR‐279d | UGACUAGAUCUACACUCAUUGA | Bombyx mori |
mir‐279 | 105 | 22 | tta‐miR‐279e | UGACUAGAGUCACACUCGUCCA | Apis mellifera |
mir‐279 | 635 | 22 | tta‐miR‐279f | UGACUAGAUCCAUACUCGUCUG | Bombyx mori |
mir‐279 | 26 | 24 | tta‐miR‐279 g | UGACUAGAUCGAAAUACUCGUCCC | Apis mellifera |
mir‐279 | 103 | 25 | tta‐miR‐279 h | UGACUAGAUCCAUACUCGUCUAUAG | Tribolium castaneum |
mir‐2796 | 65 | 21 | tta‐miR‐2796a | AGGCCGGCGGAAACUACUUGC | Nasonia vitripennis |
mir‐2796 | 5 | 22 | tta‐miR‐2796b | GUAGGCCGGCGGAAACUACUAG | Acyrthosiphon pisum |
mir‐2796 | 168 | 23 | tta‐miR‐2796c | GUAGGCCGGCGGAAACUACUUGC | Apis mellifera |
mir‐14 | 26 | 21 | tta‐miR‐14a | UCAGUCUUUUUCUCUCUCCUA | Anopheles gambiae |
mir‐14 | 12427 | 22 | tta‐miR‐14b | UCAGUCUUUUUCUCUCUCCUAU | Acyrthosiphon pisum |
mir‐993 | 3 | 20 | tta‐miR‐993a | UACCCUGUAGAUCCGGGCUU | Tribolium castaneum |
mir‐993 | 110 | 23 | tta‐miR‐993b | GAAGCUCGUCUCUACAGGUAUCU | Acyrthosiphon pisum |
mir‐993 | 10 | 23 | tta‐miR‐993c | UACCCUGUAGAUCCGGGCUUUUG | Manduca sexta |
mir‐993 | 3 | 23 | tta‐miR‐993d | UACCCUGUAGUUCCGGGCUUUUG | Drosophila melanogaster |
mir‐1175 | 106 | 23 | tta‐miR‐1175a | AAGUGGAGCAGUGGUCUCUUCAC | Tribolium castaneum |
mir‐1175 | 17 | 22 | tta‐miR‐1175b | AAGUGGAGUAGUGGUCUCAUCG | Aedes aegypti |
mir‐1175 | 4 | 23 | tta‐miR‐1175c | UGAGAUUCACUCCUCCAACUUAC | Apis mellifera |
mir‐1175 | 56 | 24 | tta‐miR‐1175d | UGAGAUUCAACUCCUCCAACUUAA | Bombyx mori |
mir‐124 | 106 | 21 | tta‐miR‐124a | UAAGGCACGCGGUGAAUGCCA | Schmidtea mediterranea |
mir‐124 | 84 | 21 | tta‐miR‐124b | UAAGGCACGCGGUGAAUGCUA | Anolis carolinensis |
mir‐263 | 4 | 21 | tta‐miR‐263a | AAUGGCACUGGAAGAAUUCAC | Bombyx mori |
mir‐263 | 18 | 23 | tta‐miR‐263b | AAUGGCACUGGAAGAAUUCACGG | Aedes aegypti |
mir‐263 | 20 | 24 | tta‐miR‐263c | AAUGGCACUGGAAGAAUUCACGGG | Drosophila melanogaster |
mir‐2944 | 18 | 22 | tta‐miR‐2944a | UAUCACAGCAGUAGUUACCUGA | Aedes aegypti |
mir‐2944 | 13 | 23 | tta‐miR‐2944b | UAUCACAGCAGUAGUUACCUGGU | Apis mellifera |
mir‐13 | 399 | 22 | tta‐miR‐13a | UAUCACAGCCACUUUGAUGAGC | Tribolium castaneum |
mir‐13 | 17 | 23 | tta‐miR‐13b | UAUCACAGCCAUUUUUGACGAGU | Bombyx mori |
mir‐34 | 15 | 22 | tta‐miR‐34a | UGGCAGUGUGGUUAGCUGGUUG | Aedes aegypti |
mir‐34 | 5 | 23 | tta‐miR‐34b | UGGCAGUGUGGUUAGCUGGUUGU | Ascaris suum |
mir‐34 | 3 | 23 | tta‐miR‐34c | UGGCAGUGUGGUUAGCUGGUAGU | Lottia gigantea |
mir‐133 | 15 | 22 | tta‐miR‐133a | UUGGUCCCCGUCAACCAGCUGU | Schmidtea mediterranea |
mir‐133 | 14 | 22 | tta‐miR‐133b | UUGGUCCCCUUCAACCAGCUGU | Drosophila persimilis |
mir‐317 | 5 | 21 | tta‐miR‐317a | UGAACACAGCUGGUGGUAUCU | Acyrthosiphon pisum |
mir‐317 | 13 | 24 | tta‐miR‐317b | UGAACACAGCUGGUGGUAUCUUCU | Lottia gigantea |
mir‐317 | 13 | 25 | tta‐miR‐317c | UGAACACAGCUGGUGGUAUCUCAGU | Apis mellifera |
mir‐317 | 4 | 25 | tta‐miR‐317d | UGAACACAGCUGGUGGUAUCUCUUU | Capitella teleta |
mir‐12 | 13 | 21 | tta‐miR‐12a | UGAGUAUUACAUCAGGUACUG | Tribolium castaneum |
mir‐12 | 3 | 23 | tta‐miR‐12b | UGAGUAUUACAUCAGGUACUGGU | Daphnia pulex |
mir‐252 | 4 | 22 | tta‐miR‐252a | CUAAGUACUAGUGCCGCAGGAG | Drosophila melanogaster |
mir‐252 | 5 | 23 | tta‐miR‐252b | CUAAGUACUAGUGCCGCAGGAGU | Saccoglossus kowalevskii |
mir‐277 | 11 | 22 | tta‐miR‐277a | UAAAUGCACUAUCUGGUACGAC | Aedes aegypti |
mir‐277 | 5 | 23 | tta‐miR‐277b | UAAAUGCACUAUCUGGUACGACA | Acyrthosiphon pisum |
mir‐31 | 3 | 21 | tta‐miR‐31a | AGGCAAGAUGUCGGCAUAGCU | Tribolium castaneum |
mir‐31 | 7 | 22 | tta‐miR‐31b | GGCAAGAUGUCGGCAUAGCUGA | Apis mellifera |
mir‐3477 | 69 | 23 | tta‐miR‐3477a | UAAUCUCAUGCGGUAACUGUGAG | Apis mellifera |
mir‐3477 | 121 | 22 | tta‐miR‐3477b | UAAUCUCAUGUGGUAACUGUGA | Apis mellifera |
mir‐2779 | 5 | 20 | tta‐miR‐2779 | AUAUCCGGCUCGAAGGACCA | Bombyx mori |
mir‐929 | 4 | 22 | tta‐miR‐929 | AAAUUGACUCUAGUAGGGAGUC | Drosophila melanogaster |
mir‐71 | 172 | 22 | tta‐miR‐71 | UCUCACUACCUUGUCUUUCAUG | Tribolium castaneum |
mir‐375 | 4 | 22 | tta‐miR‐375 | UUUGUUCGUUCGGCUCGAGUUA | Apis mellifera |
mir‐190 | 3 | 24 | tta‐miR‐190 | AGAUAUGUUUGAUAUUCUUGGUUG | Acyrthosiphon pisum |
mir‐7550 | 3 | 18 | tta‐miR‐7550 | AUCCGGCUCGAAGGACCA | Ictalurus punctatus |
mir‐482 | 3 | 22 | tta‐miR‐482 | GGAAUGGGCUGAUUGGGAAGCA | Phaseolus vulgaris |
mir‐2478 | 3 | 20 | tta‐miR‐2478 | GUAUCCCACUUCUGACACCA | Bos taurus |
mir‐316 | 3 | 21 | tta‐miR‐316 | UGUCUUUUUCCGCUUUGCUGC | Heliconius melpomene |
mir‐3049 | 98 | 23 | tta‐miR‐3049 | UCGGGAAGGUAGUUGCGGCGGAU | Apis mellifera |
mir‐996 | 57 | 21 | tta‐miR‐996 | UGACUAGAUACAUACUCGUCU | Apis mellifera |
mir‐275 | 40 | 23 | tta‐miR‐275 | UCAGGUACCUGAAGUAGCGCGCG | Anopheles gambiae |
mir‐965 | 31 | 22 | tta‐miR‐965 | UAAGCGUAUAGCUUUUCCCCUU | Tribolium castaneum |
mir‐67 | 25 | 24 | tta‐miR‐67 | UCACAACCUCCUUGAGUGAGUUGA | Ascaris suum |
mir‐315 | 21 | 23 | tta‐miR‐315 | UUUUGAUUGUUGCUCAGAAAGCC | Acyrthosiphon pisum |
mir‐305 | 14 | 23 | tta‐miR‐305 | UUUGUACUUCAUCAGGUGCUCUG | Tetranychus urticae |
mir‐894 | 11 | 20 | tta‐miR‐894 | CGUUUCACGUCGGGUUCACC | Physcomitrella patens |
mir‐3533 | 9 | 20 | tta‐miR‐3533 | AUGAAGUGUGACGUGGACAU | Bos taurus |
mir‐307 | 9 | 20 | tta‐miR‐307 | UCACAACCUCCUUGAGUGAG | Daphnia pulex |
mir‐2765 | 664 | 22 | tta‐miR‐2765 | UGGUAACUCCACCACCGUUGGC | Bombyx mori |
mir‐210 | 22 | 21 | tta‐miR‐210 | CUUGUGCGUGUGACAGCGGCU | Drosophila melanogaster |
mir‐1 | 650 | 22 | tta‐miR‐1 | UGGAAUGUAAAGAAGUAUGGAG | Drosophila melanogaster |
mir‐87 | 18 | 21 | tta‐miR‐87 | GUGAGCAAAGUUUCAGGUGUG | Ixodes scapularis |
let‐7 | 279 | 21 | tta‐let‐7 | TGAGGTAGTAGGTTGTATAGT | Drosophila melanogaster |
mir‐3791 | 15 | 21 | tta‐miR‐3791 | UCACCGGGUAGGAUUCAUCCA | Apis mellifera |
Plant‐specific miRNA | |||||
mir‐9774 | 6 | 22 | – | CAAGATATTGGGTATTTCTGTC | Triticum aestivum |
Expression value is equivalent to number of miRNA reads from the library.