Table 5.
MicroRNA Family | Name of the Novel miRNA | miRNA sequence | miRNA* sequence | Hairpin sequence | Start | End | Orientation | miRNA Reads | miRNA* Reads | MFE |
---|---|---|---|---|---|---|---|---|---|---|
Novel miRNA‐1 | tta‐miR‐N1 | AGGUAACUAACUUGCAGGCCA | NO | GUGGGAUGGCCAGUAAGUUAGAGCCCUCUUGUUUAGAUGAAGUUGGAGGUAACUAACUUGCAGGCCAAGCCAC | 3630 | 3650 | ‐ [Negative strand] | 28 | Nil | −32.9 |
Novel miRNA‐2 | tta‐miR‐N2 | UUCGUUGUGCGGAAAAAUGGAU | NO | CGCCAGGACCACAUUUUUCUGCACGGAUGGACUGAGAUUGAUACGGUUCGUUGUGCGGAAAAAUGGAUUCUUGGCG | 1439 | 1460 | + [Positive strand] | 6 | Nil | −40 |
Novel miRNA‐3 | tta‐miR‐N3 | AUCAGCGAGUUCUGGCACUAC | NO | GGGAGGGAUCAGCGAGUUCUGGCACUACGUGCAGAUUUGAGUGCGUGUGUCAGAACUAAUUGAACCCGCCC | 11956 | 11976 | + [Positive strand] | 15 | Nil | −39.6 |
Novel miRNA‐4 | tta‐miR‐N4 | UGACUAGACUCUCACUCGUCU | NO | UCCCUCGGCGAGUGAGUUUCUGGCUCAUGUUGUCAGUUCAUGACUAGACUCUCACUCGUCUAGGGA | 8647 | 8667 | + [Positive strand] | 3414 | Nil | −37.2 |
Novel miRNA‐5 | tta‐miR‐N5 | UGGUAACUAACUUGCGGGCCA | NO | GGUGGCUCGUAAGUUAAGUUCCCGCUGUGAUUUAAACUAGUGGUAACUAACUUGCGGGCCACU | 13477 | 13497 | ‐ [Negative strand] | 305 | Nil | −35.1 |
Novel miRNA‐6 | tta‐miR‐N6 | UUUGUUCGCUCGGCUCGAUGUA | CCUCGAGCCUGGCGGACAGGU(5) CCUCGAGCCUGGCGGACAGGUU(9) | CCUAAUGCCUCGAGCCUGGCGGACAGGUUGUCCUGUUCGAGUAAUUUGUUCGCUCGGCUCGAUGUAUGAGG | 1925 | 1946 | + [Positive strand] | 528 | 14 | −37.9 |
Novel miRNA‐7 | tta‐miR‐N7 | UCAGGUACCAGAAGUAGCGCG | GUGCUGCAUCCGGUGCUAGUG(1) | CUUGCCGGUGCUGCAUCCGGUGCUAGUGGCUGUGAUUUUAAACCAGUCAGGUACCAGAAGUAGCGCGCGGGGAG | 12973 | 12993 | ‐ [Negative strand] | 1978 | 1 | −36 |
Novel miRNA‐8 | tta‐miR‐N8 | UCUUUGGUGAUUUGGCGGUAUG | AUAAAGCUAGAUUACCAAAGC(6) AUAAAGCUAGAUUACCAAAGCA(6) | UGUUGCUUCUUUGGUGAUUUGGCGGUAUGUAAUAAUUGAAAGGCCAUAAAGCUAGAUUACCAAAGCAGGGACA | 14289 | 14310 | + [Positive strand] | 22 | 12 | −29.3 |
Novel miRNA‐9 | tta‐miR‐N9 | CGCGUCGGUGUGCGCAGAAGG | CCUGCCUGGAGCCGCCGACGG(3) | GUAGGGUCGCGUCGGUGUGCGCAGAAGGGUCUAUGUGUGGGCCUGCCUGGAGCCGCCGACGGCUGUGC | 274 | 294 | + [Positive strand] | 12 | 3 | −34.8 |