Table 6.
Details of Thrips tabaci miRNA*s obtained from this study. Information regarding mature, star and precursor sequences, start and end position, orientation, expression values, MFE value and (A+U) content, etc. have been given
| MicroRNA Family | Name of the miRNA* | miRNA | miRNA* | Hairpin sequence | Start | End | miRNA* Abundance | Minimum Free Energy(MFE) | Hairpin G/C% |
|---|---|---|---|---|---|---|---|---|---|
| mir‐14 | tta‐tta‐miR*‐14 | UCAGUCUUUUUCUCUCUCCUAU | GGGGAGAGAUAAGGGCUUUGGCU(5) | GGGGAGAGAUAAGGGCUUUGGCUCGAUUUUAAAGUCAGUCAGUCUUUUUCUCUCUCC | 345 | 366 | 5 | −26.7 | 45.614033 |
| mir‐184 | tta‐miR*‐184 | UGGACGGAGAACUGAUAAGGG | CCUUGUCAUUCUCGUGUCCGGU(21) | CGCCUCCUUGUCAUUCUCGUGUCCGGUUGUGCAUUCAACUUACUGGACGGAGAACUGAUAAGGGCGCG | 592 | 612 | 21 | −33.5 | 54.411762 |
| mir‐8 | tta‐miR*‐8 | UAAUACUGUCAGGUAAAGAUGUC | CAUCUUACCGGGCAGCAUUAGAC(308) | UCUGUUCACAUCUUACCGGGCAGCAUUAGACUUGGAUUGAUAGCCUCUAAUACUGUCAGGUAAAGAUGUCGUCAGA | 3,662 | 3,684 | 308 | −27.7 | 43.421055 |
| mir‐276 | tta‐miR*‐276 | UAGGAACUUCAUACCGUGCUCU | UAGCGAGGUAUAGAGUUCCUACG(196) AGCGAGGUAUAGAGUUCCUACG(62) | UCCAGUAGCGAGGUAUAGAGUUCCUACGUGGUGUUGGGUACAGUAGGAACUUCAUACCGUGCUCUUGGA | 4,052 | 4,073 | 258 | −33.9 | 49.275364 |
| mir‐210 | tta‐miR*‐210 | CUUGUGCGUGUGACAGCGGCU | AGCUGCUGGACACUGCACAAG(1) AGCUGCUGGACACUGCACAAGA(7) | AGCUGCUGGACACUGCACAAGAUUAGACUUUGGAAAACUCUUGUGCGUGUGACAGCGGCU | 10,847 | 1,0867 | 8 | −28.09 | 50 |
| mir‐1 | tta‐miR*‐1 | UGGAAUGUAAAGAAGUAUGGAG | CCAUACUUCCUUGCUUCCCAU(7) CCAUACUUCCUUGCUUCCCAUA(4) | GUUCCAUACUUCCUUGCUUCCCAUAUUGCCAUUUGAAACUUAUGGAAUGUAAAGAAGUAUGGAGC | 581 | 602 | 11 | −24.86 | 38.46154 |
| mir‐3477 | tta‐miR*‐3477 | UAAUCUCAUGUGGUAACUGUGA | UCAGGGUUCCGCGUGAGGUUG(1) | GUAAUCUCAUGUGGUAACUGUGAGUUGUACUUGUACCUCAGGGUUCCGCGUGAGGUUGC | 5,735 | 5,756 | 1 | −31.3 | 49.152542 |
| mir‐71 | tta‐miR*‐71 | UCUCACUACCUUGUCUUUCAUG | UGAAAGACAUGGGUAGUGAGAU(19) UGAAAGACAUGGGUAGUGAGAUG(20) | GGGUGACGUGAAAGACAUGGGUAGUGAGAUGUUUGCUGCUGUACAUCUCACUACCUUGUCUUUCAUGUUGCUC | 1,176 | 1,197 | 39 | −47.1 | 46.575344 |
| mir‐13 | tta‐miR*‐13 | UAUCACAGCCACUUUGAUGAGC | GCCAUCAAUACGGCUGUGAGAGC(64) CCAUCAAUACGGCUGUGAGAGC(17) | GAGGCUGGAGCCAUCAAUACGGCUGUGAGAGCGUGAAUUUGAUACCGUAUCACAGCCACUUUGAUGAGCUCUGGCUUC | 1,427 | 1,449 | 81 | −41 | 51.282055 |
| let‐7 | tta‐miR*‐let‐7 | UGAGGUAGUAGGUUGUAUAGU | CUGUACAACUUGCUAACUUUC(2) CUGUACAACUUGCUAACUUUCC(4) | GCCGGGUUGAGGUAGUAGGUUGUAUAGUAAUGAACUACAACACUUGGGAGUACUGUACAACUUGCUAACUUUCCCUCGC | 1,826 | 1,846 | 6 | −31.9 | 45.56962 |