Table 1. The most significant SNPs found by basic case/control association analysis.
| CHR | SNP | BP | A1 | F_A | F_U | A2 | CHISQ | P | OR |
|---|---|---|---|---|---|---|---|---|---|
| 9 | BICF2P753594 | 51531181 | C | 0,07609 | 0,2447 | G | 19,54 | 9,86E-06 | 0,2542 |
| 9 | BICF2P436494 | 51541093 | G | 0,07609 | 0,25 | A | 20,52 | 5,91E-06 | 0,2471 |
| 9 | BICF2P812982 | 51544743 | G | 0,07609 | 0,2553 | A | 21,51 | 3,52E-06 | 0,2402 |
| 11 | BICF2S23033111 | 20056580 | C | 0,212 | 0,04787 | A | 22,28 | 2,36E-06 | 5,349 |
CHR: Chromosome
SNP: SNP ID
BP: Physical position on CanFam3.1
A1: Minor allele name (based on whole sample)
F A: Frequency of this allele in cases
F U: Frequency of this allele in controls
A2: Major allele name
CHISQ: Basic allelic test chi-square
P: Asymptotic p-value for this test
OR:Estimated odds ratio (for A1, i.e. A2 is reference)