REAGENT or RESOURCE	SOURCE	IDENTIFIER
Deposited Data
1524 Pseudomonas genomes	This study	ENA: PRJEB24450
192 A. thaliana metagenomes	This study	ENA: PRJEB24450
192 16S v4 sequences	This study	ENA: PRJEB24450
Sequences of v3-v4 region	This study	SRA: PRJNA430505
Pan-genome data and visualization	This study	http://panx.weigelworld.org/
Experimental Models: Organisms/Strains
1524 Pseudomonas strains	This study	N/A
Pst DC3000	Thorsten Nürnberger	DC3000
36 Pseudomonas tested for growth effect	This study	N/A
A. thaliana genotype Ey15-2	Arabidopsis Stock Center TAIR	CS76399
Software and Algorithms
Mash	Ondov et al., 2016	https://github.com/marbl/Mash
Mothur	Schloss et al., 2009	https://github.com/mothur/mothur
RAxML	Stamatakis et al., 2005	https://github.com/stamatak/standard-RAxML
Vegan	Oksanen et al, 2016	https://github.com/vegandevs/vegan